 Thomas
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f1212b39b4
refactor modkit.rs: drop full-file load, use tabix per-region fetch
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пре 1 месец |
|
Thomas
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7ce17964e9
audit and refactor src/io/modkit.rs
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пре 1 месец |
|
Thomas
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1b42565a2f
fix vcf.rs module doc: add fetch_vcf to header table
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пре 1 месец |
|
Thomas
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8806fc5b0a
add tabix region fetch: fetch_tabix_lines_with, fetch_bed, fetch_vcf
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пре 1 месец |
|
Thomas
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bceb3174ad
audit and refactor src/io/vcf.rs
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пре 1 месец |
|
Thomas
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15224fb822
enforce tabix sort order in BgzTabixWriter::write_record
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пре 1 месец |
|
Thomas
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d2b910af0b
add BgzTabixWriter with IndexFormat enum and refactor convert_bgz_with_tabix
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пре 1 месец |
|
Thomas
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c3934a3c28
fix atomic BGZF write in readers.rs and writers.rs using TempFileGuard
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пре 1 месец |
|
Thomas
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f2572964e4
audit and fix src/io/readers.rs
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пре 1 месец |
|
Thomas
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4dde55f778
audit and fix src/io/bed.rs
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пре 1 месец |
|
Thomas
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bd93786500
refactor and audit src/io/bam.rs
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пре 1 месец |
|
Thomas
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dcd1aa64f7
assembler pipe with recursion
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пре 1 месец |
|
Thomas
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44067c4310
assembler pipe
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пре 1 месец |
|
Thomas
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b85b028475
coral
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пре 1 месец |
|
Thomas
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15bce449b8
new bgz writer remove BGZIP crate cause of error writing big bgzip files
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пре 1 месец |
|
Thomas
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871e6e4129
scan
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пре 1 месец |
|
Thomas
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49c56654c3
scan
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пре 1 месец |
|
Thomas
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09c26b3b2c
scan
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пре 1 месец |
|
Thomas
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d6250eeae7
coral
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пре 1 месец |
|
Thomas
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37eef933cf
better scan
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пре 1 месец |
|
Thomas
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6d4dfaf4ad
better scan
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пре 1 месец |
|
Thomas
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9681be650f
better scan
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пре 1 месец |
|
Thomas
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9183f25a61
better scan
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пре 1 месец |
|
Thomas
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70dc1304d2
better scan
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пре 1 месец |
|
Thomas
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4848af2a3a
better gatk
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пре 1 месец |
|
Thomas
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dce4a111cc
nanomonsv -> mediumq; GATK ok
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пре 1 месец |
|
Thomas
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9ddb488f87
robuster epilog parsing
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пре 1 месец |
|
Thomas
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22d9b9f29d
savana_mem for slurm max mem
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пре 1 месец |
|
Thomas
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f216c34dce
reduced clairS threads; added slurm_max_par default: 10; use of run! and run_many! in bam import
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пре 1 месец |
|
Thomas
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27489a85bc
config;panel_bam
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пре 1 месец |
