[package]
name = "pandora_lib_promethion"
version = "0.1.0"
edition = "2021"

[dependencies]
log = "^0.4.22"
env_logger = "^0.11.3"
anyhow = "1.0.86"
glob = "0.3.1"
pandora_lib_bindings = { git = "https://git.t0m4.fr/Thomas/pandora_lib_bindings.git" }
pandora_lib_scan = { git = "https://git.t0m4.fr/Thomas/pandora_lib_scan.git" }
pandora_lib_variants = { git = "https://git.t0m4.fr/Thomas/pandora_lib_variants.git" }
pandora_lib_assembler = { git = "https://git.t0m4.fr/Thomas/pandora_lib_assembler.git" }
regex = "1.10.5"
chrono = { version = "0.4.38", features = ["serde"] }
csv = "1.3.0"
serde = { version = "1.0.204", features = ["derive"] }
serde_json = "1.0"
tracing-test = "0.2.5"
tracing = "0.1.40"
logtest = "2.0.0"
test-log = "0.2.16"
noodles-csi = "0.41.0"
num-format = "0.4.4"
locale_config = "0.3.0"
byte-unit = "5.1.4"
pty-process = "0.4.0"
nix = { version = "0.29.0", features = ["term", "process" ] }
expectrl = "0.7.1"
ptyprocess = "0.4.1"
duct = "0.13.7"
uuid = { version = "1.10.0", features = ["v4"] }
rayon = "1.10.0"
hashbrown = { version = "0.15.0", features = ["rayon"] }
ctrlc = "3.4.4"
lazy_static = "1.5.0"
indicatif = "0.17.8"
tokio = "1.41.1"
features = "0.10.0"
full = "0.3.0"
rust-htslib = "0.49.0"
podders = "0.1.4"
arrow = "53.3.0"
bgzip = "0.3.1"
tempfile = "3.14.0"
dashmap = { version = "6.1.0", features = ["rayon"] }