[package]
name = "pandora_lib_promethion"
version = "0.1.0"
edition = "2021"

[dependencies]
log = "^0.4.22"
env_logger = "^0.11.3"
anyhow = "1.0.86"
glob = "0.3.2"
pandora_lib_scan = { git = "https://git.t0m4.fr/Thomas/pandora_lib_scan.git" }
pandora_lib_variants = { git = "https://git.t0m4.fr/Thomas/pandora_lib_variants.git" }
pandora_lib_assembler = { git = "https://git.t0m4.fr/Thomas/pandora_lib_assembler.git" }
chrono = { version = "0.4.40", features = ["serde"] }
csv = "1.3.0"
serde = { version = "1.0.204", features = ["derive"] }
serde_json = "1.0"
tracing = "0.1.40"
noodles-csi = "0.43.0"
num-format = "0.4.4"
byte-unit = "5.1.4"
duct = "0.13.7"
uuid = { version = "1.13.1", features = ["v4"] }
rayon = "1.10.0"
hashbrown = { version = "0.15.0", features = ["rayon"] }
ctrlc = "3.4.4"
lazy_static = "1.5.0"
indicatif = "0.17.8"
rust-htslib = "0.50.0"
arrow = { git = "https://github.com/apache/arrow-rs" }
# arrow = "54.2.1"
bgzip = "0.3.1"
tempfile = "3.14.0"
dashmap = { version = "6.1.0", features = ["rayon", "serde"] }
noodles-fasta = "0.48.0"
noodles-core = "0.16.0"
blake3 = "1.5.5"
rusqlite = { version = "0.33.0", features = ["chrono", "serde_json"] }
dirs = "6.0.0"
noodles-gff = "0.43.0"
itertools = "0.14.0"
rand = "0.9.0"
tar = "0.4.43"
flatbuffers = "25.2.10"
ordered-float = { version = "5.0.0", features = ["serde"] }
bitcode = "0.6.5"
semver = "1.0.26"
petgraph = "0.8.1"
regex = "1.12.2"
toml = "0.9.8"
directories = "6.0.0"
rustc-hash = "2.1.1"
hex = "0.4.3"
walkdir = "2.5.0"
thiserror = "2.0.17"

[profile.dev]
opt-level = 0
debug = false