pandora_lib_promethion/src/pipes/mod.rs

use std::path::Path;

use crate::{config::Config};

// pub mod somatic;
pub mod somatic_slurm;
pub mod somatic;


pub trait Initialize: Sized {
    fn initialize(id: &str, config: &Config) -> anyhow::Result<Self>;
}

pub trait InitializeSolo: Sized {
    fn initialize(id: &str, time: &str, config: &Config) -> anyhow::Result<Self>;
}

pub trait ShouldRun {
    fn should_run(&self) -> bool;
}

pub trait Version {
    fn version(config: &Config) -> anyhow::Result<String>;
    fn version_slurm(_config: &Config) -> anyhow::Result<String> {
        anyhow::bail!("No configured")
    }
}

// pub trait LoadVariants {
//     fn load_variants(&self) -> anyhow::Result<Variants>;
// }

pub fn exists_all(paths: Vec<&str>) -> anyhow::Result<()> {
    for path in paths.iter() {
        if !Path::new(path).exists() {
            anyhow::bail!("{path} should exist")
        }
    }
    Ok(())
}