pandora_lib_promethion/Cargo.toml

[package]
name = "pandora_lib_promethion"
version = "0.1.0"
edition = "2021"

[dependencies]
log = "^0.4.29"
env_logger = "^0.11.8"
anyhow = "1.0.100"
rmp-serde = "1.3.0"
zstd = "0.13.3"
aes-gcm = "0.10.3"
argon2 = "0.5.3"
base64 = "0.22.1"
glob = "0.3.2"
pandora_lib_assembler = { git = "https://git.t0m4.fr/Thomas/pandora_lib_assembler.git" }
chrono = { version = "0.4.40", features = ["serde"] }
csv = "1.3.0"
serde = { version = "1.0.204", features = ["derive"] }
serde_json = "1.0"
tracing = "0.1.40"
noodles-csi = "0.53.0"
num-format = "0.4.4"
byte-unit = "5.1.4"
uuid = { version = "1.13.1", features = ["v4"] }
rayon = "1.11.0"
hashbrown = { version = "0.16.1", features = ["rayon"] }
lazy_static = "1.5.0"
indicatif = "0.17.8"
rust-htslib = "1.0.0"
arrow = { git = "https://github.com/apache/arrow-rs" }
# arrow = "54.2.1"
# bgzip = "0.3.1"
dashmap = { version = "6.1.0", features = ["rayon", "serde"] }
noodles-fasta = "0.58.0"
noodles-core = "0.18.0"
blake3 = "1.8.2"
rusqlite = { version = "0.38.0", features = ["chrono", "serde_json"] }
dirs = "6.0.0"
noodles-gff = "0.54.0"
itertools = "0.14.0"
rand = "0.9.2"
tar = "0.4.43"
flatbuffers = "25.2.10"
ordered-float = { version = "5.0.0", features = ["serde"] }
bitcode = "0.6.5"
semver = "1.0.26"
petgraph = "0.8.1"
regex = "1.12.2"
toml = "0.9.8"
directories = "6.0.0"
rustc-hash = "2.1.1"
hex = "0.4.3"
walkdir = "2.5.0"
thiserror = "2.0.17"
hostname = "0.4.2"
noodles-tabix = "0.59.0"
noodles-bgzf = "0.45.0"
triple_accel = "0.4.0"
chainfile = "0.3.0"
omics = "0.2.0"
filetime = "0.2.27"

[profile.dev]
opt-level = 0
debug = false

[target.'cfg(windows)'.patch.crates-io]
hts-sys = { path = "patches/hts-sys" }
rust-htslib = { path = "patches/rust-htslib" }