Thomas
a1b3c01b01
Integration to somatic pipe Severus Savana DeepSomatic / LongPhase up
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11 månader sedan | |
|---|---|---|
| src | 11 månader sedan | |
| .gitignore | 1 år sedan | |
| Cargo.lock | 11 månader sedan | |
| Cargo.toml | 11 månader sedan | |
| README.md | 1 år sedan |
README.md
Install
Dependencies
For building required HTSlib:
sudo apt install cmake libclang-dev
- minimap2
- (samtools)[https://www.htslib.org/download/]
- (dorado)[https://github.com/nanoporetech/dorado]
- (bcftools)[https://www.htslib.org/download/]
- (modkit)[https://github.com/nanoporetech/modkit]
- VEP: cf pandora_lib_variants for VEP install
- nanomonsv (cf dependencies at github, TODO: use racon) ###