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Thomas b06901c8a1 better tasks runner hai 1 ano
src b06901c8a1 better tasks runner hai 1 ano
.gitignore 494efb6235 run hai 1 ano
Cargo.lock 63c5922d5d todo_variants_agg tested hai 1 ano
Cargo.toml f56aa5599c todo_variants_agg hai 1 ano
README.md 6cb25899fa dorado up to 0.8.1 changed demuxed names so new fn to find the bam file hai 1 ano

README.md

For building required HTSlib:

sudo apt install cmake libclang-dev

  • minimap2
  • samtools
  • dorado
  • modkit

    cargo install --git https://github.com/nanoporetech/modkit.git
    

for variants:

  • VEP: cf pandora_lib_variants for VEP install