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pandora_lib_promethion
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Thomas
b5468f9176
dorado: added kit-name in basecaller and usage of kit-name from pod files instead of config
1 tahun lalu
src
b5468f9176
dorado: added kit-name in basecaller and usage of kit-name from pod files instead of config
1 tahun lalu
.gitignore
494efb6235
run
1 tahun lalu
Cargo.lock
14c829fadf
up dorado 0.9.0: added sequencing kit name for trim
1 tahun lalu
Cargo.toml
14c829fadf
up dorado 0.9.0: added sequencing kit name for trim
1 tahun lalu
README.md
e0894f5af7
bcftools keep only in a + modkit pileup
1 tahun lalu
README.md
Install
Dependencies
For building required HTSlib:
sudo apt install cmake libclang-dev
minimap2
(samtools)[
https://www.htslib.org/download/
]
(dorado)[
https://github.com/nanoporetech/dorado
]
(bcftools)[
https://www.htslib.org/download/
]
(modkit)[
https://github.com/nanoporetech/modkit
]
VEP: cf pandora_lib_variants for VEP install
nanomonsv (cf dependencies at github, TODO: use racon) ###