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pandora_lib_promethion
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Thomas
e01ab06376
somatic pipeline / blake3 128 for annotations hash / seq from fasta at position +/- len, entropy
1 年之前
src
e01ab06376
somatic pipeline / blake3 128 for annotations hash / seq from fasta at position +/- len, entropy
1 年之前
.gitignore
494efb6235
run
1 年之前
Cargo.lock
e01ab06376
somatic pipeline / blake3 128 for annotations hash / seq from fasta at position +/- len, entropy
1 年之前
Cargo.toml
e01ab06376
somatic pipeline / blake3 128 for annotations hash / seq from fasta at position +/- len, entropy
1 年之前
README.md
e0894f5af7
bcftools keep only in a + modkit pileup
1 年之前
gg.txt
710bd6515c
annotations
1 年之前
README.md
Install
Dependencies
For building required HTSlib:
sudo apt install cmake libclang-dev
minimap2
(samtools)[
https://www.htslib.org/download/
]
(dorado)[
https://github.com/nanoporetech/dorado
]
(bcftools)[
https://www.htslib.org/download/
]
(modkit)[
https://github.com/nanoporetech/modkit
]
VEP: cf pandora_lib_variants for VEP install
nanomonsv (cf dependencies at github, TODO: use racon) ###