up

Cargo.lock

@@ -32,6 +32,55 @@ dependencies = [
  "memchr",
 ]
 
+[[package]]
+name = "anstream"
+version = "0.6.15"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "64e15c1ab1f89faffbf04a634d5e1962e9074f2741eef6d97f3c4e322426d526"
+dependencies = [
+ "anstyle",
+ "anstyle-parse",
+ "anstyle-query",
+ "anstyle-wincon",
+ "colorchoice",
+ "is_terminal_polyfill",
+ "utf8parse",
+]
+
+[[package]]
+name = "anstyle"
+version = "1.0.8"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "1bec1de6f59aedf83baf9ff929c98f2ad654b97c9510f4e70cf6f661d49fd5b1"
+
+[[package]]
+name = "anstyle-parse"
+version = "0.2.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "eb47de1e80c2b463c735db5b217a0ddc39d612e7ac9e2e96a5aed1f57616c1cb"
+dependencies = [
+ "utf8parse",
+]
+
+[[package]]
+name = "anstyle-query"
+version = "1.1.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "6d36fc52c7f6c869915e99412912f22093507da8d9e942ceaf66fe4b7c14422a"
+dependencies = [
+ "windows-sys",
+]
+
+[[package]]
+name = "anstyle-wincon"
+version = "3.0.4"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "5bf74e1b6e971609db8ca7a9ce79fd5768ab6ae46441c572e46cf596f59e57f8"
+dependencies = [
+ "anstyle",
+ "windows-sys",
+]
+
 [[package]]
 name = "anyhow"
 version = "1.0.89"
@@ -251,6 +300,25 @@ version = "1.1.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "3d7b894f5411737b7867f4827955924d7c254fc9f4d91a6aad6b097804b1018b"
 
+[[package]]
+name = "colorchoice"
+version = "1.0.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "d3fd119d74b830634cea2a0f58bbd0d54540518a14397557951e79340abc28c0"
+
+[[package]]
+name = "console"
+version = "0.15.8"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0e1f83fc076bd6dd27517eacdf25fef6c4dfe5f1d7448bafaaf3a26f13b5e4eb"
+dependencies = [
+ "encode_unicode",
+ "lazy_static",
+ "libc",
+ "unicode-width",
+ "windows-sys",
+]
+
 [[package]]
 name = "convert_case"
 version = "0.4.0"
@@ -496,6 +564,35 @@ version = "1.13.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "60b1af1c220855b6ceac025d3f6ecdd2b7c4894bfe9cd9bda4fbb4bc7c0d4cf0"
 
+[[package]]
+name = "encode_unicode"
+version = "0.3.6"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a357d28ed41a50f9c765dbfe56cbc04a64e53e5fc58ba79fbc34c10ef3df831f"
+
+[[package]]
+name = "env_filter"
+version = "0.1.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "4f2c92ceda6ceec50f43169f9ee8424fe2db276791afde7b2cd8bc084cb376ab"
+dependencies = [
+ "log",
+ "regex",
+]
+
+[[package]]
+name = "env_logger"
+version = "0.11.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "e13fa619b91fb2381732789fc5de83b45675e882f66623b7d8cb4f643017018d"
+dependencies = [
+ "anstream",
+ "anstyle",
+ "env_filter",
+ "humantime",
+ "log",
+]
+
 [[package]]
 name = "equivalent"
 version = "1.0.1"
@@ -829,6 +926,12 @@ dependencies = [
  "openssl-sys",
 ]
 
+[[package]]
+name = "humantime"
+version = "2.1.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "9a3a5bfb195931eeb336b2a7b4d761daec841b97f947d34394601737a7bba5e4"
+
 [[package]]
 name = "idna"
 version = "0.5.0"
@@ -885,6 +988,44 @@ dependencies = [
  "hashbrown",
 ]
 
+[[package]]
+name = "indicatif"
+version = "0.17.8"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "763a5a8f45087d6bcea4222e7b72c291a054edf80e4ef6efd2a4979878c7bea3"
+dependencies = [
+ "console",
+ "instant",
+ "number_prefix",
+ "portable-atomic",
+ "unicode-width",
+]
+
+[[package]]
+name = "indicatif-log-bridge"
+version = "0.2.3"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "63703cf9069b85dbe6fe26e1c5230d013dee99d3559cd3d02ba39e099ef7ab02"
+dependencies = [
+ "indicatif",
+ "log",
+]
+
+[[package]]
+name = "instant"
+version = "0.1.13"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "e0242819d153cba4b4b05a5a8f2a7e9bbf97b6055b2a002b395c96b5ff3c0222"
+dependencies = [
+ "cfg-if",
+]
+
+[[package]]
+name = "is_terminal_polyfill"
+version = "1.70.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "7943c866cc5cd64cbc25b2e01621d07fa8eb2a1a23160ee81ce38704e97b8ecf"
+
 [[package]]
 name = "itertools"
 version = "0.12.1"
@@ -1178,6 +1319,12 @@ dependencies = [
  "libm",
 ]
 
+[[package]]
+name = "number_prefix"
+version = "0.4.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "830b246a0e5f20af87141b25c173cd1b609bd7779a4617d6ec582abaf90870f3"
+
 [[package]]
 name = "object"
 version = "0.36.4"
@@ -1234,7 +1381,10 @@ dependencies = [
  "charming",
  "csv",
  "dashmap",
+ "env_logger",
  "indexmap",
+ "indicatif",
+ "indicatif-log-bridge",
  "log",
  "pandora_lib_graph",
  "rand",
@@ -1383,6 +1533,12 @@ dependencies = [
  "miniz_oxide 0.7.4",
 ]
 
+[[package]]
+name = "portable-atomic"
+version = "1.7.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "da544ee218f0d287a911e9c99a39a8c9bc8fcad3cb8db5959940044ecfc67265"
+
 [[package]]
 name = "ppv-lite86"
 version = "0.2.20"
@@ -2184,6 +2340,12 @@ version = "0.1.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "b1d386ff53b415b7fe27b50bb44679e2cc4660272694b7b6f3326d8480823a94"
 
+[[package]]
+name = "unicode-width"
+version = "0.1.14"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "7dd6e30e90baa6f72411720665d41d89b9a3d039dc45b8faea1ddd07f617f6af"
+
 [[package]]
 name = "url"
 version = "2.5.2"
@@ -2257,6 +2419,12 @@ dependencies = [
  "tiny-skia-path",
 ]
 
+[[package]]
+name = "utf8parse"
+version = "0.2.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821"
+
 [[package]]
 name = "uuid"
 version = "1.10.0"

Cargo.toml

@@ -5,11 +5,14 @@ edition = "2021"
 
 [dependencies]
 anyhow = "1.0.86"
+env_logger = "0.11.5"
+indicatif = "0.17.8"
 log = "0.4.22"
 rayon = "1.10.0"
 rust-htslib = "0.47.0"
 uuid = { version = "1.10.0", features = ["v4"] }
 pandora_lib_graph = { git = "https://git.t0m4.fr/Thomas/pandora_lib_graph.git" }
+indicatif-log-bridge = "0.2.2"
 serde = { version = "1.0.*", default-features = false }
 csv = "1.3.0"
 dashmap = { version = "6.0.1", features = ["rayon"] }

src/lib.rs

@@ -406,7 +406,7 @@ mod tests {
     #[test]
     fn save_stats() -> anyhow::Result<()> {
         init();
-        let id = "BECERRA";
+        let id = "DAHAN";
         let breaks = vec![1, 6, 15];
 
         let result_dir = "/data/longreads_basic_pipe";