annotations

src/lib.rs

@@ -11,12 +11,10 @@ mod tests {
     use anyhow::{Ok, Result};
     use indicatif::MultiProgress;
     use indicatif_log_bridge::LogWrapper;
-    use log::info;
 
     use crate::{
         config::Config,
-        sql::variants_sql::{load_variants_name, remove_variants_names},
-        variants::{VCFSource, Variant, VariantType, Variants},
+        sql::variants_sql::load_variants_name,
     };
 
     use super::*;
@@ -28,7 +26,7 @@ mod tests {
     }
 
     #[test]
-    fn run_pipe() -> Result<()> {
+    fn load_from_vcf() -> Result<()> {
         let name = "GALLET";
 
         let logger =
@@ -52,12 +50,7 @@ mod tests {
         LogWrapper::new(multi.clone(), logger).try_init().unwrap();
 
         let mut variants = load_variants_name(name, &multi)?;
-        let v = variants.get_cat(&variants::VariantCategory::Constit);
-        // let v = v.iter().filter(|v| 0.25 < v.vaf.unwrap() && v.vaf.unwrap() < 0.75 )
-        //     .map(|v| {
-        //
-        // }).collect::<Vec<Variant>>();
-        //
+        let _variants = variants.get_cat(&variants::VariantCategory::Constit);
 
         variants.write_vcf_cat("test.vcf.gz", &variants::VariantCategory::Somatic)?;
         println!("{} variants loaded from db.", variants.len());