[package]
name = "pandora_lib_variants"
version = "0.1.0"
edition = "2021"
include = ["src/**/*"]

# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

[dependencies]
log = "^0.4.20"
env_logger = "^0.10.1"
clap = { version = "^4.3.16", features = ["derive"] }
anyhow = "^1.0.75"
indicatif = {version = "0.17.8", features = ["rayon"]}
indicatif-log-bridge = "0.2.2"
num-integer = "0.1.46"
# kdam = "0.5.1"
# pbr = "1.1.1"
serde = { version = "^1.0.188", features = ["derive"] }
confy = "0.5.1"
hashbrown = { version = "0.14.3", features = ["rayon", "serde"] }
serde_json = "1.0"
bgzip = "0.3.1"
rust-lapper = "1.1.0"
csv = "1.3.0"
statrs = "0.16.0"
rust-htslib = "0.44.1"
uuid = { version = "1.6.1", features = ["serde", "v4"] }
prettytable-rs = "^0.10"
noodles-core = "0.14.0"
noodles-gff = "0.27.0"
noodles-bgzf = "0.26.0"
noodles-csi = "0.30.0"
noodles-fasta = "0.33.0"
noodles-sam = "0.49.0"
noodles-bam = "0.52.0"
noodles-vcf = "0.49.0"
noodles-tabix = "0.36.0"
rayon = "1.8.0"
serde_rusqlite = "0.34.0"
dashmap = { version = "5.5.3", features = ["rayon", "serde"] }
crossbeam-deque = "0.8.5"
trc = "1.2.4"
pot = "=3.0.0"
utoipa = "4.2.3"
regex = "1.10.5"