[package]
name = "pandora_lib_variants"
version = "0.1.0"
edition = "2021"
include = ["src/**/*"]

# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

[dependencies]
log = "^0.4.22"
env_logger = "^0.11.6"
clap = { version = "^4.5.23", features = ["derive"] }
anyhow = "^1.0.95"
indicatif = {version = "0.17.9", features = ["rayon"]}
indicatif-log-bridge = "0.2.3"
num-integer = "0.1.46"
serde = { version = "^1.0.217", features = ["derive"] }
confy = "0.6.1"
hashbrown = { version = "0.15.2", features = ["rayon", "serde"] }
serde_json = "1.0"
bgzip = "0.3.1"
rust-lapper = "1.1.0"
csv = "1.3.1"
statrs = "0.18.0"
rust-htslib = "0.49.0"
uuid = { version = "1.11.0", features = ["serde", "v4"] }
prettytable-rs = "^0.10"
noodles-core = "0.15.0"
noodles-gff = "0.41.0"
noodles-bgzf = "0.34.0"
noodles-csi = "0.41.0"
noodles-fasta = "0.46.0"
noodles-sam = "0.68.0"
noodles-bam = "0.72.0"
noodles-vcf = "0.70.0"
noodles-tabix = "0.47.0"
rayon = "1.10.0"
serde_rusqlite = "0.37.0"
dashmap = { version = "6.1.0", features = ["rayon", "serde"] }
crossbeam-deque = "0.8.6"
trc = "1.2.4"
pot = "=3.0.1"
utoipa = "5.3.1"
regex = "1.11.1"
pandora_lib_pileup = { git  = "https://git.t0m4.fr/Thomas/pandora_lib_pileup.git" }
crossbeam-channel = "0.5.14"
flate2 = "1.0.35"
num-format = "0.4.4"
postcard = { version = "1.1.1", features = ["alloc"] }
charming = { version = "0.4.0", features = ["ssr"] }