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@@ -109,7 +109,7 @@ pub fn get_n_start(
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let record = read.context(format!("eRR"))?;
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let record = read.context(format!("eRR"))?;
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let rstart = record.pos() as i32;
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let rstart = record.pos() as i32;
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if rstart >= start && rstart < stop {
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if rstart >= start && rstart < stop {
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- if record.qual() > 40 {
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+ if record.mapq() > 40 {
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n_start += 1;
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n_start += 1;
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}
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}
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// start_positions.push(rstart);
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// start_positions.push(rstart);
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