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THETE_stats.json

THETE_stats.json 2.3 KB
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  1. {
    2. 

  2.   "consequences": [
    3. 

  3.     12166,
    4. 

  4.     {
    5. 

  5.       "intergenic_variant": 5591,
    6. 

  6.       "splice_polypyrimidine_tract_variant,intron_variant,non_coding_transcript_variant": 2,
    7. 

  7.       "splice_region_variant,non_coding_transcript_exon_variant": 4,
    8. 

  8.       "splice_donor_variant,non_coding_transcript_variant": 2,
    9. 

  9.       "5_prime_UTR_variant": 5,
    10. 

  10.       "intron_variant,non_coding_transcript_variant": 1341,
    11. 

  11.       "feature_elongation,intron_variant": 3,
    12. 

  12.       "synonymous_variant": 32,
    13. 

  13.       "intron_variant": 3613,
    14. 

  14.       "inframe_insertion": 2,
    15. 

  15.       "missense_variant": 29,
    16. 

  16.       "splice_donor_5th_base_variant,intron_variant,non_coding_transcript_variant": 2,
    17. 

  17.       "frameshift_variant": 3,
    18. 

  18.       "stop_gained": 2,
    19. 

  19.       "splice_polypyrimidine_tract_variant,intron_variant": 6,
    20. 

  20.       "3_prime_UTR_variant": 75,
    21. 

  21.       "splice_region_variant,splice_polypyrimidine_tract_variant,intron_variant": 5,
    22. 

  22.       "missense_variant,splice_region_variant": 2,
    23. 

  23.       "downstream_gene_variant": 686,
    24. 

  24.       "non_coding_transcript_exon_variant": 79,
    25. 

  25.       "upstream_gene_variant": 699,
    26. 

  26.       "splice_acceptor_variant": 2,
    27. 

  27.       "feature_elongation,intron_variant,non_coding_transcript_variant": 2,
    28. 

  28.       "splice_region_variant,splice_polypyrimidine_tract_variant,intron_variant,non_coding_transcript_variant": 2,
    29. 

  29.       "transcript_ablation": 2
    30. 

  30.     }
    31. 

  31.   ],
    32. 

  32.   "ncbi_features": [
    33. 

  33.     598,
    34. 

  34.     {
    35. 

  35.       "repeat_instability_region": 8,
    36. 

  36.       "biological_region": 287,
    37. 

  37.       "mitotic_recombination_region": 5,
    38. 

  38.       "meiotic_recombination_region": 14,
    39. 

  39.       "mobile_genetic_element": 2,
    40. 

  40.       "silencer": 10,
    41. 

  41.       "matrix_attachment_site": 2,
    42. 

  42.       "DNaseI_hypersensitive_site": 4,
    43. 

  43.       "protein_binding_site": 2,
    44. 

  44.       "promoter": 2,
    45. 

  45.       "minisatellite": 5,
    46. 

  46.       "antisense_RNA": 5,
    47. 

  47.       "enhancer": 264,
    48. 

  48.       "non_allelic_homologous_recombination_region": 2
    49. 

  49.     }
    50. 

  50.   ],
    51. 

  51.   "callers_cat": [
    52. 

  52.     12166,
    53. 

  53.     {
    54. 

  54.       "Nanomonsv": 16,
    55. 

  55.       "ClairS": 420,
    56. 

  56.       "Sniffles": 148,
    57. 

  57.       "ClairS,DeepVariant": 3184,
    58. 

  58.       "DeepVariant": 8403
    59. 

  59.     }
    60. 

  60.   ],
    61. 

  61.   "cosmic_sup_1": 13,
    62. 

  62.   "n_total": 7964323,
    63. 

  63.   "n_constit": 3504804,
    64. 

  64.   "n_tumoral": 4458549,
    65. 

  65.   "n_constit_first": 2329315,
    66. 

  66.   "n_loh_first": 3474,
    67. 

  67.   "n_low_mrd_depth_first": 1070325,
    68. 

  68.   "n_constit_sec": 128065,
    69. 

  69.   "n_low_diversity_sec": 183528,
    70. 

  70.   "n_low_mrd_depth_sec": 718656,
    71. 

  71.   "n_somatic_sec": 24331
    72. 

  72. }
    73.