@@ -3,8 +3,6 @@
import fs from 'fs'
import readline from 'readline'
import { XMLParser } from 'fast-xml-parser'
-import jsonata from 'jsonata'
-import { text } from 'stream/consumers'
const line$ = (path: string) => readline.createInterface({
input: fs.createReadStream(path),
@@ -15,7 +15,6 @@
"typescript": "^4.6.2"
},
"dependencies": {
- "fast-xml-parser": "^4.0.6",
- "jsonata": "^1.8.6"
+ "fast-xml-parser": "^4.0.6"
}
@@ -1,6 +1,6 @@
import { makeIndex, readOffset, getEnrty, getEntryFromGeneName, getInteractionsFromEntry } from ".";
+
(async()=>{
// https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions/
// https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/HUMAN_9606_idmapping.dat.gz
@@ -14,11 +14,6 @@ fast-xml-parser@^4.0.6:
dependencies:
strnum "^1.0.5"
-jsonata@^1.8.6:
- version "1.8.6"
- resolved "https://registry.yarnpkg.com/jsonata/-/jsonata-1.8.6.tgz#e5f0e6ace870a34bac881a182ca2b31227122791"
- integrity sha512-ZH2TPYdNP2JecOl/HvrH47Xc+9imibEMQ4YqKy/F/FrM+2a6vfbGxeCX23dB9Fr6uvGwv+ghf1KxWB3iZk09wA==
-
strnum@^1.0.5:
version "1.0.5"
resolved "https://registry.yarnpkg.com/strnum/-/strnum-1.0.5.tgz#5c4e829fe15ad4ff0d20c3db5ac97b73c9b072db"