m

index.js

@@ -139,7 +139,7 @@ const getAccessFromGene = (idmappingPath, geneName) => __awaiter(void 0, void 0,
 const getInteractionsFromEntry = (json) => __awaiter(void 0, void 0, void 0, function* () {
     const blaskList = ['DNA', 'PHOSPHOSERINE', 'MOTIFS', 'INFECTION', 'PROTEIN', 'PROTEINS', 'GAMMA-SECRETASE', 'CALCIUM',
         'MICROBIAL', 'VIRUS', 'HEPATITIS', 'HERPES', 'SIMPLEX', 'RELATED', 'AND', 'CLATHRIN', 'WORTMANNIN',
-        'NUCLEOSOME'];
+        'NUCLEOSOME', 'undefined'];
     const uniprotIDs = Array.isArray(json.entry.accession) ? json.entry.accession : [json.entry.accession];
     // geneName
     const gnTT = Array.isArray(json.entry.gene) ? json.entry.gene[0] : json.entry.gene;

index.ts

@@ -91,7 +91,7 @@ const getInteractionsFromEntry = async (json:any) => {
     const blaskList = 
     ['DNA', 'PHOSPHOSERINE', 'MOTIFS', 'INFECTION', 'PROTEIN', 'PROTEINS', 'GAMMA-SECRETASE', 'CALCIUM',
     'MICROBIAL', 'VIRUS', 'HEPATITIS', 'HERPES', 'SIMPLEX', 'RELATED', 'AND', 'CLATHRIN', 'WORTMANNIN',
-    'NUCLEOSOME']
+    'NUCLEOSOME', 'undefined']
     
     const uniprotIDs = Array.isArray(json.entry.accession) ? json.entry.accession : [json.entry.accession]
 

test.js

@@ -22,7 +22,7 @@ const fs_1 = __importDefault(require("fs"));
     // const n = await getEntryFromGeneName(idmappingPath, uniprotDB, 'TTC23L')
     // await fs.promises.writeFile('test/test-CITED2.json', JSON.stringify(n, null, 4))
     // console.log(await getInteractionsFromEntry(n))
-    const geneName = 'H3C15';
+    const geneName = 'undefined';
     const n = yield (0, _1.getEntryFromGeneName)(idmappingPath, uniprotDB, geneName);
     yield fs_1.default.promises.writeFile('test/test-' + geneName + '.json', JSON.stringify(n, null, 4));
     const tmp = yield (0, _1.getInteractionsFromEntry)(n);

test.ts

@@ -11,7 +11,7 @@ import fs from 'fs'
     // await fs.promises.writeFile('test/test-CITED2.json', JSON.stringify(n, null, 4))
     // console.log(await getInteractionsFromEntry(n))
 
-    const geneName = 'H3C15'
+    const geneName = 'undefined'
     const n = await getEntryFromGeneName(idmappingPath, uniprotDB, geneName)
     await fs.promises.writeFile('test/test-' + geneName + '.json', JSON.stringify(n, null, 4))
     const tmp = await getInteractionsFromEntry(n)