uniprotParser/test.ts

import { makeIndex, readOffset, getEnrty, getEntryFromGeneName, getInteractionsFromEntry } from ".";
import fs from 'fs'
import jsonata from 'jsonata'
(async()=>{
    // https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions/
    // https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/HUMAN_9606_idmapping.dat.gz
    const idmappingPath = '/home/thomas/NGS/ref/UNIPROT/HUMAN_9606_idmapping.dat'
    const uniprotDB = '/home/thomas/NGS/ref/UNIPROT/uniprot_sprot_human.xml'

    // const n = await getEntryFromGeneName(idmappingPath, uniprotDB, 'TTC23L')
    // await fs.promises.writeFile('test/test-CITED2.json', JSON.stringify(n, null, 4))
    // console.log(await getInteractionsFromEntry(n))

    const geneName = 'HTT'
    const n = await getEntryFromGeneName(idmappingPath, uniprotDB, geneName)
    await fs.promises.writeFile('test/test-' + geneName + '.json', JSON.stringify(n, null, 4))
    const tmp = await getInteractionsFromEntry(n)
    console.log(tmp);    
})()