uniprotParser/test.ts

import { makeIndex, readOffset, getEnrty, getEntryFromGeneName, getInteractionsFromEntry,findDistance } from ".";
import fs from 'fs'
import jsonata from 'jsonata'
(async()=>{
    // https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions/
    // https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/HUMAN_9606_idmapping.dat.gz
    const idmappingPath = '/home/thomas/NGS/ref/UNIPROT/HUMAN_9606_idmapping.dat'
    const uniprotDB = '/home/thomas/NGS/ref/UNIPROT/uniprot_sprot_human.xml'

    // const n = await getEntryFromGeneName(idmappingPath, uniprotDB, 'TTC23L')
    // await fs.promises.writeFile('test/test-CITED2.json', JSON.stringify(n, null, 4))
    // console.log(await getInteractionsFromEntry(n))

    // const tmp = await getInteractionsFromEntry(await getEntryFromGeneName(idmappingPath, uniprotDB, 'UBQLN1'))
    // console.log(tmp);
    
    const dist = await findDistance(idmappingPath, uniprotDB, 'TTC23L','HSPA8')
    console.log('dist',dist);
    
    
})()