m

presentation.aux

@@ -133,8 +133,15 @@
 \HyPL@Entry{23<</P(20)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {4}{0}{13}{24/24}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {24}{24}}}
-\@writefile{nav}{\headcommand {\beamer@partpages {1}{24}}}
-\@writefile{nav}{\headcommand {\beamer@subsectionpages {12}{24}}}
-\@writefile{nav}{\headcommand {\beamer@sectionpages {12}{24}}}
-\@writefile{nav}{\headcommand {\beamer@documentpages {24}}}
-\@writefile{nav}{\headcommand {\gdef \inserttotalframenumber {20}}}
+\pbs@newkey{pbs@last@page}{25}
+\HyPL@Entry{24<</P(21)>>}
+\@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {4}{0}{14}{25/25}{}{0}}}
+\@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {25}{25}}}
+\pbs@newkey{pbs@last@page}{26}
+\@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {4}{0}{15}{26/26}{}{0}}}
+\@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {26}{26}}}
+\@writefile{nav}{\headcommand {\beamer@partpages {1}{26}}}
+\@writefile{nav}{\headcommand {\beamer@subsectionpages {12}{26}}}
+\@writefile{nav}{\headcommand {\beamer@sectionpages {12}{26}}}
+\@writefile{nav}{\headcommand {\beamer@documentpages {26}}}
+\@writefile{nav}{\headcommand {\gdef \inserttotalframenumber {21}}}

presentation.blg

@@ -1,5 +1,5 @@
 [0] Config.pm:312> INFO - This is Biber 2.15
 [0] Config.pm:315> INFO - Logfile is 'presentation.blg'
-[48] biber:330> INFO - === mar. juin  1, 2021, 18:03:35
-[56] Biber.pm:415> INFO - Reading 'presentation.bcf'
-[99] Utils.pm:384> WARN - No data sources defined!
+[49] biber:330> INFO - === mer. juin  2, 2021, 18:02:47
+[57] Biber.pm:415> INFO - Reading 'presentation.bcf'
+[100] Utils.pm:384> WARN - No data sources defined!

presentation.fdb_latexmk

@@ -1,16 +1,16 @@
 # Fdb version 3
-["biber presentation"] 1622563414 "presentation.bcf" "presentation.bbl" "presentation" 1622563418
-  "presentation.bcf" 1622563417 101149 070b8d437a9377c293336e898b92955c "xelatex"
+["biber presentation"] 1622649767 "presentation.bcf" "presentation.bbl" "presentation" 1622824651
+  "presentation.bcf" 1622824650 101149 070b8d437a9377c293336e898b92955c "xelatex"
   (generated)
   "presentation.bbl"
   "presentation.blg"
-["xdvipdfmx"] 1622563417 "presentation.xdv" "presentation.pdf" "presentation" 1622563418
-  "presentation.xdv" 1622563417 100344 9e81ae404714b1098ba5fffbf12a046f "xelatex"
+["xdvipdfmx"] 1622824650 "presentation.xdv" "presentation.pdf" "presentation" 1622824651
+  "presentation.xdv" 1622824650 126604 731b136a067c59f47a2bc9217283f8c1 "xelatex"
   (generated)
   "presentation.pdf"
-["xelatex"] 1622563416 "/home/thomas/Documents/Présentations/Translocations_Capture/presentation.tex" "presentation.xdv" "presentation" 1622563418
+["xelatex"] 1622824649 "/home/thomas/Documents/Présentations/Translocations_Capture/presentation.tex" "presentation.xdv" "presentation" 1622824651
   "/etc/texmf/web2c/texmf.cnf" 1610016767 475 c0e671620eb5563b2130f56340a5fde8 ""
-  "/home/thomas/Documents/Présentations/Translocations_Capture/presentation.tex" 1622563414 9819 3966f19b43ef80e74a1351a5c28e218d ""
+  "/home/thomas/Documents/Présentations/Translocations_Capture/presentation.tex" 1622824647 12221 0a37e41b7656b39bc7b9ac8d29622934 ""
   "/usr/share/texlive/texmf-dist/fonts/map/fontname/texfonts.map" 1577235249 3524 cb3e574dea2d1052e39280babc910dc8 ""
   "/usr/share/texlive/texmf-dist/fonts/tfm/adobe/zapfding/pzdr.tfm" 1136768653 1528 f853c4d1b4e0550255e02831fdc8496f ""
   "/usr/share/texlive/texmf-dist/fonts/tfm/public/amsfonts/cmextra/cmex7.tfm" 1246382020 1004 54797486969f23fa377b128694d548df ""
@@ -146,7 +146,6 @@
   "/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty" 1576625391 3935 57aa3c3e203a5c2effb4d2bd2efbc323 ""
   "/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty" 1581632200 4947 0c2888dd88121ae675fc6e82213623ba ""
   "/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty" 1580683321 5159 892429808d9e0e2b3548aaefd9a06ed0 ""
-  "/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty" 1580683321 5050 8933a39ad74377accd18991c5eb90c58 ""
   "/usr/share/texlive/texmf-dist/tex/latex/base/size11.clo" 1580683321 8462 61fdf79debfc3dc4dab35ec6cf83fbf7 ""
   "/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd" 1580683321 2431 b6cead9f069ed55f4fba0c637aa047b6 ""
   "/usr/share/texlive/texmf-dist/tex/latex/base/tuenc.def" 1581632200 27440 69bf3d7c71626cc47b8ff9b7bbf0a3c2 ""
@@ -281,6 +280,7 @@
   "Images/TRD_all.pdf" 1622116708 38994 a4eb45393dd1a2a4bb7e947e499b7b03 ""
   "Images/alignement.pdf" 1614255713 27266 e04100bd28eec19f6051877f7a88454c ""
   "Images/assemblage.pdf" 1614701719 27648 ed0d81e4fd45d7413d38514055c748af ""
+  "Images/dko_zfp_surv.png" 1622470852 24059 43940d17937b490d8bc759ff91adcc2a ""
   "Images/fragmentation.pdf" 1614258226 2033408 4d27f242f7690042cfd535d9d041c149 ""
   "Images/gviz_stacked/TRD-LMO2.pdf" 1622118626 15617 d22d56e22ac2c57237e0dd5882b10c7d ""
   "Images/gviz_stacked/TRD-TAL1.pdf" 1622119173 13852 8b2d45163dce563758390489db08b32e ""
@@ -289,20 +289,20 @@
   "Images/necker.pdf" 1614248206 204986 c9a96656b20298ffe81f928a5553a5b2 ""
   "Images/selection.pdf" 1614696825 35027 c5064437ccbd937e8b99637a24b4ebb0 ""
   "Images/translocation_10_14.pdf" 1613992812 2125570 7198b17bf53e357d3c137c7aeb94e30a ""
-  "presentation.aux" 1622563417 10254 e4d8d70b7bef930cea25dd89fa8a0f50 "xelatex"
-  "presentation.bbl" 1622563415 0 d41d8cd98f00b204e9800998ecf8427e "biber presentation"
-  "presentation.nav" 1622563417 5133 993094fac3f336b57537189f1ca6e94d "xelatex"
-  "presentation.out" 1622563417 0 d41d8cd98f00b204e9800998ecf8427e "xelatex"
-  "presentation.run.xml" 1622563417 2315 d839dfb7da1f8b1b665578d8a1eb3d0e "xelatex"
-  "presentation.tex" 1622563414 9819 3966f19b43ef80e74a1351a5c28e218d ""
-  "presentation.toc" 1622563417 439 377fccb8a80fe935dae6064d90baa100 "xelatex"
+  "presentation.aux" 1622824650 10808 7c42a0ff63be853210652bc7532ed101 "xelatex"
+  "presentation.bbl" 1622649767 0 d41d8cd98f00b204e9800998ecf8427e "biber presentation"
+  "presentation.nav" 1622824650 5459 1d771d7c1805746c1c43bbfe1cc95820 "xelatex"
+  "presentation.out" 1622824650 0 d41d8cd98f00b204e9800998ecf8427e "xelatex"
+  "presentation.run.xml" 1622824650 2315 d839dfb7da1f8b1b665578d8a1eb3d0e "xelatex"
+  "presentation.tex" 1622824647 12221 0a37e41b7656b39bc7b9ac8d29622934 ""
+  "presentation.toc" 1622824650 439 377fccb8a80fe935dae6064d90baa100 "xelatex"
   (generated)
-  "presentation.out"
-  "presentation.aux"
-  "presentation.bcf"
-  "presentation.snm"
   "presentation.run.xml"
-  "presentation.xdv"
   "presentation.toc"
-  "presentation.log"
   "presentation.nav"
+  "presentation.out"
+  "presentation.log"
+  "presentation.bcf"
+  "presentation.xdv"
+  "presentation.aux"
+  "presentation.snm"

presentation.fls

@@ -402,8 +402,6 @@ INPUT /usr/share/texlive/texmf-dist/tex/latex/l3packages/l3keys2e/l3keys2e.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/l3packages/l3keys2e/l3keys2e.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/ocgx2/ocgbase.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/ocgx2/ocgbase.sty
-INPUT /usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
-INPUT /usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerfontthemeprofessionalfonts.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerfontthemeprofessionalfonts.sty
 INPUT presentation.aux
@@ -494,6 +492,7 @@ INPUT Images/RAG_ZFP36L2.pdf
 INPUT Images/RAG_ZFP36L2_mech.pdf
 INPUT Images/RAG_ZFP_TREC_ZFP.pdf
 INPUT Images/RSS.pdf
+INPUT Images/dko_zfp_surv.png
 OUTPUT presentation.nav
 OUTPUT presentation.toc
 OUTPUT presentation.snm

presentation.log

@@ -1,4 +1,4 @@
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+This is XeTeX, Version 3.14159265-2.6-0.999992 (TeX Live 2020/Debian) (preloaded format=xelatex 2021.1.7)  4 JUN 2021 18:37
 entering extended mode
  restricted \write18 enabled.
  file:line:error style messages enabled.
@@ -1142,44 +1142,36 @@ Package: ocgbase 2019/11/04 v0.17 support package for ocgx2.sty
 \@anim@lineno=\count535
 \@anim@curfield=\count536
 \@anim@@resizeflags=\count537
-) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
-Package: inputenc 2018/08/11 v1.3c Input encoding file
-\inpenc@prehook=\toks53
-\inpenc@posthook=\toks54
-
-
-Package inputenc Warning: inputenc package ignored with utf8 based engines.
-
 ) (/usr/share/texlive/texmf-dist/tex/latex/beamer/beamerfontthemeprofessionalfonts.sty)
 \@quotelevel=\count538
 \@quotereset=\count539
  (./presentation.aux)
 \openout1 = `presentation.aux'.
 
-LaTeX Font Info:    Checking defaults for OML/cmm/m/it on input line 61.
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-LaTeX Font Info:    Checking defaults for OMS/cmsy/m/n on input line 61.
-LaTeX Font Info:    ... okay on input line 61.
-LaTeX Font Info:    Checking defaults for OT1/cmr/m/n on input line 61.
-LaTeX Font Info:    ... okay on input line 61.
-LaTeX Font Info:    Checking defaults for T1/cmr/m/n on input line 61.
-LaTeX Font Info:    ... okay on input line 61.
-LaTeX Font Info:    Checking defaults for TS1/cmr/m/n on input line 61.
-LaTeX Font Info:    Trying to load font information for TS1+cmr on input line 61.
+LaTeX Font Info:    Checking defaults for OML/cmm/m/it on input line 60.
+LaTeX Font Info:    ... okay on input line 60.
+LaTeX Font Info:    Checking defaults for OMS/cmsy/m/n on input line 60.
+LaTeX Font Info:    ... okay on input line 60.
+LaTeX Font Info:    Checking defaults for OT1/cmr/m/n on input line 60.
+LaTeX Font Info:    ... okay on input line 60.
+LaTeX Font Info:    Checking defaults for T1/cmr/m/n on input line 60.
+LaTeX Font Info:    ... okay on input line 60.
+LaTeX Font Info:    Checking defaults for TS1/cmr/m/n on input line 60.
+LaTeX Font Info:    Trying to load font information for TS1+cmr on input line 60.
  (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd
 File: ts1cmr.fd 2019/12/16 v2.5j Standard LaTeX font definitions
 )
-LaTeX Font Info:    ... okay on input line 61.
-LaTeX Font Info:    Checking defaults for TU/lmr/m/n on input line 61.
-LaTeX Font Info:    ... okay on input line 61.
-LaTeX Font Info:    Checking defaults for OMX/cmex/m/n on input line 61.
-LaTeX Font Info:    ... okay on input line 61.
-LaTeX Font Info:    Checking defaults for U/cmr/m/n on input line 61.
-LaTeX Font Info:    ... okay on input line 61.
-LaTeX Font Info:    Checking defaults for PD1/pdf/m/n on input line 61.
-LaTeX Font Info:    ... okay on input line 61.
-LaTeX Font Info:    Checking defaults for PU/pdf/m/n on input line 61.
-LaTeX Font Info:    ... okay on input line 61.
+LaTeX Font Info:    ... okay on input line 60.
+LaTeX Font Info:    Checking defaults for TU/lmr/m/n on input line 60.
+LaTeX Font Info:    ... okay on input line 60.
+LaTeX Font Info:    Checking defaults for OMX/cmex/m/n on input line 60.
+LaTeX Font Info:    ... okay on input line 60.
+LaTeX Font Info:    Checking defaults for U/cmr/m/n on input line 60.
+LaTeX Font Info:    ... okay on input line 60.
+LaTeX Font Info:    Checking defaults for PD1/pdf/m/n on input line 60.
+LaTeX Font Info:    ... okay on input line 60.
+LaTeX Font Info:    Checking defaults for PU/pdf/m/n on input line 60.
+LaTeX Font Info:    ... okay on input line 60.
 
 *geometry* driver: auto-detecting
 *geometry* detected driver: xetex
@@ -1222,7 +1214,7 @@ ABD: EveryShipout initializing macros
 Package hyperref Warning: Height of page (\stockheight) is invalid (0.0pt),
 (hyperref)                using 11in.
 
-Package hyperref Info: Link coloring OFF on input line 61.
+Package hyperref Info: Link coloring OFF on input line 60.
 (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
 Package: nameref 2019/09/16 v2.46 Cross-referencing by name of section
  (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty
@@ -1232,9 +1224,9 @@ Package: gettitlestring 2019/12/15 v1.6 Cleanup title references (HO)
 )
 \c@section@level=\count540
 )
-LaTeX Info: Redefining \ref on input line 61.
-LaTeX Info: Redefining \pageref on input line 61.
-LaTeX Info: Redefining \nameref on input line 61.
+LaTeX Info: Redefining \ref on input line 60.
+LaTeX Info: Redefining \pageref on input line 60.
+LaTeX Info: Redefining \nameref on input line 60.
  (./presentation.out) (./presentation.out)
 \@outlinefile=\write6
 \openout6 = `presentation.out'.
@@ -1266,14 +1258,14 @@ Package biblatex Info: Automatic encoding selection.
 Package biblatex Info: Trying to load bibliographic data...
 Package biblatex Info: ... file 'presentation.bbl' found.
  (./presentation.bbl)
-Package biblatex Info: Reference section=0 on input line 61.
-Package biblatex Info: Reference segment=0 on input line 61.
+Package biblatex Info: Reference section=0 on input line 60.
+Package biblatex Info: Reference segment=0 on input line 60.
 
 
-Package layouts Warning: Layout scale set to 0.5 on input line 61.
+Package layouts Warning: Layout scale set to 0.5 on input line 60.
 
 (./presentation.nav)
-Underfull \hbox (badness 10000) in paragraph at lines 70--70
+Underfull \hbox (badness 10000) in paragraph at lines 69--69
 
  []
 
@@ -1282,7 +1274,7 @@ File: Images/1200aphp.pdf Graphic file (type pdf)
 File: Images/necker.pdf Graphic file (type pdf)
 <use Images/necker.pdf>
 
-Overfull \vbox (48.10193pt too high) detected at line 70
+Overfull \vbox (48.10193pt too high) detected at line 69
  []
 
 [1
@@ -1290,11 +1282,11 @@ Overfull \vbox (48.10193pt too high) detected at line 70
 ] (./presentation.toc) [2
 
 ]
-LaTeX Font Info:    Trying to load font information for U+msa on input line 80.
+LaTeX Font Info:    Trying to load font information for U+msa on input line 79.
  (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd
 File: umsa.fd 2013/01/14 v3.01 AMS symbols A
 )
-LaTeX Font Info:    Trying to load font information for U+msb on input line 80.
+LaTeX Font Info:    Trying to load font information for U+msb on input line 79.
  (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd
 File: umsb.fd 2013/01/14 v3.01 AMS symbols B
 ) [3
@@ -1307,7 +1299,7 @@ File: umsb.fd 2013/01/14 v3.01 AMS symbols B
 File: Images/translocation_10_14.pdf Graphic file (type pdf)
 <use Images/translocation_10_14.pdf>
 
-Overfull \vbox (26.27502pt too high) detected at line 112
+Overfull \vbox (26.27502pt too high) detected at line 113
  []
 
 [6
@@ -1318,7 +1310,7 @@ Overfull \vbox (26.27502pt too high) detected at line 112
 File: Images/fragmentation.pdf Graphic file (type pdf)
 <use Images/fragmentation.pdf>
 
-Overfull \vbox (17.1368pt too high) detected at line 127
+Overfull \vbox (17.1368pt too high) detected at line 128
  []
 
 [8
@@ -1337,7 +1329,7 @@ File: Images/alignement.pdf Graphic file (type pdf)
 File: Images/assemblage.pdf Graphic file (type pdf)
 <use Images/assemblage.pdf>
 
-Overfull \vbox (27.4616pt too high) detected at line 161
+Overfull \vbox (27.4616pt too high) detected at line 162
  []
 
 [11
@@ -1409,7 +1401,7 @@ Package fontspec Info: Font family 'FiraSansLight(2)' created for font 'Fira
 File: Images/TRD_all.pdf Graphic file (type pdf)
 <use Images/TRD_all.pdf>
 
-Overfull \vbox (41.39737pt too high) detected at line 194
+Overfull \vbox (41.39737pt too high) detected at line 195
  []
 
 [14
@@ -1418,7 +1410,7 @@ Overfull \vbox (41.39737pt too high) detected at line 194
 File: Images/gviz_stacked/TRD-TLX1.pdf Graphic file (type pdf)
 <use Images/gviz_stacked/TRD-TLX1.pdf>
 
-Overfull \vbox (36.39737pt too high) detected at line 205
+Overfull \vbox (36.39737pt too high) detected at line 206
  []
 
 [15
@@ -1427,7 +1419,7 @@ Overfull \vbox (36.39737pt too high) detected at line 205
 File: Images/gviz_stacked/TRD-LMO2.pdf Graphic file (type pdf)
 <use Images/gviz_stacked/TRD-LMO2.pdf>
 
-Overfull \vbox (36.39737pt too high) detected at line 215
+Overfull \vbox (36.39737pt too high) detected at line 216
  []
 
 [16
@@ -1436,7 +1428,7 @@ Overfull \vbox (36.39737pt too high) detected at line 215
 File: Images/gviz_stacked/TRD-TAL1.pdf Graphic file (type pdf)
 <use Images/gviz_stacked/TRD-TAL1.pdf>
 
-Overfull \vbox (36.39737pt too high) detected at line 225
+Overfull \vbox (36.39737pt too high) detected at line 226
  []
 
 [17
@@ -1445,7 +1437,7 @@ Overfull \vbox (36.39737pt too high) detected at line 225
 File: Images/gviz_stacked/TRD-ZFP36L2.pdf Graphic file (type pdf)
 <use Images/gviz_stacked/TRD-ZFP36L2.pdf>
 
-Overfull \vbox (36.39737pt too high) detected at line 235
+Overfull \vbox (36.39737pt too high) detected at line 236
  []
 
 [18
@@ -1454,7 +1446,7 @@ Overfull \vbox (36.39737pt too high) detected at line 235
 File: Images/RAG_ZFP36L2.pdf Graphic file (type pdf)
 <use Images/RAG_ZFP36L2.pdf>
 
-Overfull \vbox (36.39737pt too high) detected at line 246
+Overfull \vbox (36.39737pt too high) detected at line 247
  []
 
 [19
@@ -1463,7 +1455,7 @@ Overfull \vbox (36.39737pt too high) detected at line 246
 File: Images/RAG_ZFP36L2_mech.pdf Graphic file (type pdf)
 <use Images/RAG_ZFP36L2_mech.pdf>
 
-Overfull \vbox (36.39737pt too high) detected at line 257
+Overfull \vbox (36.39737pt too high) detected at line 258
  []
 
 [20
@@ -1472,12 +1464,12 @@ Overfull \vbox (36.39737pt too high) detected at line 257
 File: Images/RAG_ZFP_TREC_ZFP.pdf Graphic file (type pdf)
 <use Images/RAG_ZFP_TREC_ZFP.pdf>
 
-Overfull \hbox (1.95622pt too wide) in paragraph at lines 267--267
+Overfull \hbox (1.95622pt too wide) in paragraph at lines 268--268
  [] 
  []
 
 
-Overfull \vbox (35.0373pt too high) detected at line 267
+Overfull \vbox (35.0373pt too high) detected at line 268
  []
 
 [21
@@ -1488,13 +1480,31 @@ File: Images/RSS.pdf Graphic file (type pdf)
  [22
 
 ]
-Overfull \hbox (6.7293pt too wide) in paragraph at lines 300--300
+Overfull \hbox (8.84264pt too wide) in paragraph at lines 304--304
  [] 
  []
 
 [23
 
-] [24
+]
+File: Images/dko_zfp_surv.png Graphic file (type bmp)
+<Images/dko_zfp_surv.png>
+
+Overfull \hbox (28.45276pt too wide) in paragraph at lines 325--325
+[][]  
+ []
+
+[24
+
+]
+Missing character: There is no   in font Fira Sans Light/OT:script=latn;language=dflt;mapping=tex-text;!
+
+Overfull \vbox (0.8964pt too high) detected at line 337
+ []
+
+[25
+
+] [26
 
 ]
 \tf@nav=\write7
@@ -1506,11 +1516,11 @@ Overfull \hbox (6.7293pt too wide) in paragraph at lines 300--300
 \tf@snm=\write9
 \openout9 = `presentation.snm'.
 
-Package atveryend Info: Empty hook `BeforeClearDocument' on input line 313.
-Package atveryend Info: Empty hook `AfterLastShipout' on input line 313.
+Package atveryend Info: Empty hook `BeforeClearDocument' on input line 344.
+Package atveryend Info: Empty hook `AfterLastShipout' on input line 344.
  (./presentation.aux)
-Package atveryend Info: Empty hook `AtVeryEndDocument' on input line 313.
-Package atveryend Info: Executing hook `AtEndAfterFileList' on input line 313.
+Package atveryend Info: Empty hook `AtVeryEndDocument' on input line 344.
+Package atveryend Info: Executing hook `AtEndAfterFileList' on input line 344.
 Package rerunfilecheck Info: File `presentation.out' has not changed.
 (rerunfilecheck)             Checksum: D41D8CD98F00B204E9800998ECF8427E;0.
 Package logreq Info: Writing requests to 'presentation.run.xml'.
@@ -1518,12 +1528,12 @@ Package logreq Info: Writing requests to 'presentation.run.xml'.
 
  ) 
 Here is how much of TeX's memory you used:
- 38052 strings out of 479712
- 800893 string characters out of 5891448
- 1545851 words of memory out of 5000000
- 54501 multiletter control sequences out of 15000+600000
- 542574 words of font info for 93 fonts, out of 8000000 for 9000
+ 38066 strings out of 479712
+ 801275 string characters out of 5891448
+ 1549086 words of memory out of 5000000
+ 54511 multiletter control sequences out of 15000+600000
+ 542598 words of font info for 96 fonts, out of 8000000 for 9000
  1348 hyphenation exceptions out of 8191
  71i,27n,121p,1904b,790s stack positions out of 5000i,500n,10000p,200000b,80000s
 
-Output written on presentation.xdv (24 pages, 100344 bytes).
+Output written on presentation.xdv (26 pages, 126604 bytes).

presentation.nav

@@ -118,8 +118,16 @@
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presentation.tex

@@ -18,11 +18,10 @@
 %Graphics and Videos
 % https://tex.stackexchange.com/questions/89088/how-to-embed-video-and-animation-in-latex-and-latex-beamer-step-by-step
 \usepackage{graphicx} %The mode "LaTeX => PDF" allows the following formats: .jpg  .png  .pdf  .mps
-
 \usepackage{animate}
 
 
-\usepackage[utf8]{inputenc}
+%\usepackage[utf8]{inputenc}
 %\usetheme{Antibes}
 \usefonttheme{professionalfonts}
 
@@ -82,7 +81,9 @@
 \begin{frame}
 \frametitle{Introduction}
 \begin{itemize}
-  \item \textbf{Rationnel} : les fragments d'ADN capturés peuvent contenir des points de cassures si ils sont à une distance proche des sondes. La séquence de ces fragments étant chimérique, l'alignement sur le génome de référence ne permet pas d'observer les translocations.
+  \item \textbf{Rationnel} : les fragments d'ADN capturés peuvent contenir des points de cassures 
+  si ils sont à une distance proche des sondes. La séquence de ces fragments étant chimérique, 
+  l'alignement sur le génome de référence ne permet pas d'observer les translocations.
   \item \textbf{Objectifs} : détecter les reads chimériques et identifier les partenaires qui les composent.
   \item \textbf{Hypothèse} : il existe des translocations impliquant des partenaires inconnus.
   \item \textbf{Hypothèse alternative} : il existe des insertions de TREC.
@@ -274,7 +275,7 @@
       \includegraphics[width=\textwidth]{Images/RSS.pdf}
     \end{figure}
     \begin{itemize}
-      \item Très probable ré-insertion d'une boucle d'excision du \textit{TRD} (D2-D3).
+      \item Très probable \alert{ré-insertion d'une boucle d'excision} du \textit{TRD} (D2-D3).
       \item Cependant il semble que des translocations homozygotes doivent être éliminées (long-reads).
     \end{itemize}
   \end{center}
@@ -285,31 +286,61 @@
   \begin{table}
     \begin{tabular}[tl]{lccccr}
       \toprule
-      Nom & Clonotypage NGS & NOTCH1/FBXW7 & ETP & HOXA & Comm \\
+      \textbf{Nom} & \textbf{Clonotype} & \textbf{NOTCH1/FBXW7} & \textbf{ETP} & \textbf{HOXA} & \textbf{Comm} \\
       \midrule
-      RAGOT & 2 x $\delta$D2-$\delta$D3 & 1 & 0 & 1 & \\
-      TAHIR	& $\delta$D2-$\delta$D3 // GL	& 1	& 1	& 1 & \\
-      NEREE	& NA	& 1	& “immature”	& 0 & \\
-      2080178	& $\delta$D2-$\delta$J1 // $\delta$V1-$\delta$J2	& 0	& 0	& 0 & \\
-      HAOUZI	& $\delta$D2-$\delta$J1 // $\delta$V1-$\delta$J2	& 1	& 0	& 0	& e1a2 \\
-      JANOWSKA	& NA	& 1	& NA	& 0 & \\
+      RAGOT & 2 x $\delta$D2-$\delta$D3 & Q2398* & 0 & 1 & \\
+      TAHIR	& $\delta$D2-$\delta$D3 // GL	& P2514fs	& 1	& 1 & \\
+      NEREE	&	& FBXW7 R465H	& “immature”	& 0 & \\
+      2080178	& $\delta$D2-$\delta$J1 // $\delta$V1-$\delta$J2	& (NRAS)	& 0	& 0 & \\
+      HAOUZI	& $\delta$D2-$\delta$J1 // $\delta$V1-$\delta$J2	& P2443fs	& 0	& 0	& e1a2 \\
+      JANOWSKA	&	& T1602S	&	& 0 & \\
       \bottomrule
     \end{tabular}
   \end{table}
-  $\Rightarrow$ Clonotypes compatibles et prédominance de mutations sur la voie \textit{NOTCH1}
+  \begin{itemize}
+    \item Clonotypes compatibles
+    \item Prédominance de mutations \alert{PEST} sur la voie NOTCH1 ($\thickapprox 80\%$)
+  \end{itemize}
 \end{frame}
 
 
-\begin{frame}
-  \frametitle{ZFP36L2}
-  \begin{itemize}
-    \item Molécule se liant à certains ARNm (RBP) en 3' UTR.
-    \item Régule l'expression en favorisant la dégradation de certains ARNm.
-    \item dKO murin $\rightarrow$ LAL-T
-  \end{itemize}
+\begin{frame}[t]
+  \frametitle{ZFP36L2 --- Bibliographie }
+    \begin{columns}[onlytextwidth,T]
+      \column{\dimexpr\linewidth-30mm}
+      \begin{itemize}
+        \item Molécule de liaison aux ARNm (RBP) en 3' UTR.
+        \item Régule l'expression en favorisant la dégradation de certains ARNm (excision de la queue polyA).
+        \item \alert{dKO (L1$^{\textrm{fl}/\textrm{fl}}$L2$^{\textrm{fl}/\textrm{fl}}$ cd2-cre) murin $\rightarrow$ LAL-T}.
+        \item Réduction de l'expression d'icTCR-β dans la pop DN dKO.
+        \item Augmentation de l'expression de \alert{Notch1} relativement à thymus normal et notamment dans la pop DN.
+        \item L'expression de ZFP36L2 serait régulée positivement par Tcf-1.
+      \end{itemize}
+      \column{30mm}
+      \includegraphics[width=40mm]{Images/dko_zfp_surv.png}
+    \end{columns}
+  
   \blfootnote{Hodson DJ, Janas ML, Galloway A, et al. Deletion of the RNA-binding proteins ZFP36L1 and ZFP36L2 leads to perturbed thymic development and T lymphoblastic leukemia. Nat Immunol. 2010;11(8):717-724}
+  \blfootnote{Wang F, Qi Z, Yao Y, et al. Exploring the stage-specific roles of Tcf-1 in T cell development and malignancy at single-cell resolution. Cell Mol Immunol. 2021;18(3):644-659. doi:10.1038/s41423-020-00527-1}
 \end{frame}
 
+\begin{frame}[t]
+  \frametitle{ZFP36L2 --- Bibliographie}
+    \begin{itemize}
+      \item L'\alert{hyperméthylation} d'un super enhancer de ZFP36L2 est observée dans les cancers squameux de l'oesophage ($\thicksim$1 kb en aval du 3’UTR).
+      \item Des \alert{mutations récurrentes} de type fs ou ponctuelle ont été observées dans les LA. Jurkat = P190L, CEM et PEER = A329V. Ainsi que des délétions.
+      \item Dans LT$_{\textrm{M}}$ liaison aux pre-ARNm notamment de INFg, TNF, Pim1 puis \alert{bloque la formation du complexe ribosomal} et la traduction. Lors de l'activation des LT$_{\textrm{M}}$ cette \alert{inhibition est rapidement levée} et permet une traduction importante.
+    \end{itemize}
+  \blfootnote{Lin, De-Chen et al. “Identification of distinct mutational patterns and new driver genes in oesophageal squamous cell carcinomas and adenocarcinomas.” Gut vol. 67,10 (2018): 1769-1779. doi:10.1136/gutjnl-2017-314607}
+  \blfootnote{Iwanaga E, Nanri T, Mitsuya H, Asou N. Mutation in the RNA binding protein TIS11D/ZFP36L2 is associated with the pathogenesis of acute leukemia. Int J Oncol. 2011;38(1):25-31. }
+  \blfootnote{Salerno F, Engels S, van den Biggelaar M, et al. Translational repression of pre-formed cytokine-encoding mRNA prevents chronic activation of memory T cells. Nat Immunol. 2018;19(8):828-837. doi:10.1038/s41590-018-0155-6}
+\end{frame}
+
+\begin{frame}[standout]
+  Supp
+\end{frame}
+
+
 \end{document}
 
 \begin{frame}