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@@ -407,11 +407,11 @@ impl Sam {
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} else {
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let len = ref_range.len();
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ref_range.start = ref_pos as usize;
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- ref_range.end = ref_pos as usize + len - 1;
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+ ref_range.end = ref_pos as usize + len - 2;
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query_range.end = query_range.end;
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}
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- let ref_sequence = fa.get_sequence(&ref_name, ref_range.start.clone(), ref_range.end.clone());
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+ let ref_sequence = fa.get_sequence(&ref_name, ref_range.start.clone(), ref_range.end.clone() + 1);
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Sam {query_name, query_range, ref_name, ref_pos, ref_range, sequence, ref_sequence, ref_cigar}
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}
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