|
|
@@ -1,6 +1,6 @@
|
|
|
// MIT License
|
|
|
|
|
|
-// Copyright (c) [2022] [Thomas Stimlé]
|
|
|
+// Copyright (c) [2022] [Thomas Steimlé]
|
|
|
|
|
|
// Permission is hereby granted, free of charge, to any person obtaining a copy
|
|
|
// of this software and associated documentation files (the "Software"), to deal
|
|
|
@@ -20,7 +20,6 @@
|
|
|
// OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
|
|
// SOFTWARE.
|
|
|
|
|
|
-
|
|
|
use std::{ops::Range, collections::{HashMap, HashSet}};
|
|
|
use petgraph::{graph::{Graph, NodeIndex, EdgeIndex}, Undirected};
|
|
|
use kseq::parse_path;
|
|
|
@@ -657,13 +656,13 @@ impl NeoContig {
|
|
|
.collect::<Vec<String>>()
|
|
|
.join("\n");
|
|
|
|
|
|
- let mut name = String::new();
|
|
|
+ let mut names: Vec<String> = Vec::new();
|
|
|
for s in &self.alignments {
|
|
|
// contig:[pos-pos]
|
|
|
- name = format!("{}{}:{}-{}_", name, s.ref_name,
|
|
|
- s.ref_range.start, s.ref_range.end - 1);
|
|
|
+ names.push(format!("{}{}:{}-{}", name, s.ref_name,
|
|
|
+ s.ref_range.start, s.ref_range.end - 1));
|
|
|
}
|
|
|
- format!(">{}\n{}", name, fa_lines)
|
|
|
+ format!(">{}\n{}", names.join("_"), fa_lines)
|
|
|
}
|
|
|
}
|
|
|
pub struct Fasta {
|
