 Thomas
|
24d129c5a8
colorsdb update
|
il y a 1 mois |
|
Thomas
|
2a7460a44d
dbsnp parse even if no FREQ and echtvar use exec_jobs
|
il y a 1 mois |
|
Thomas
|
334057b7e1
merge
|
il y a 2 mois |
 STEIMLE Thomas
|
1fcf1c5c22
Apply formatting cleanup
|
il y a 2 mois |
|
Thomas
|
4bbbc66981
Introducing new executor that takes a Vec<Vec<AnyJob>> and treat the inner vec as a sequence.jobs_seq![..] helps to define this sequence from any job that implement LocalRunner and SbatchRunner. ClairS implementation and new resume chunked (TODO: add clairs_allow_resume in config.
|
il y a 2 mois |
|
Thomas
|
e8875b045d
audit io helpers
|
il y a 2 mois |
|
Thomas
|
fe19eb6036
scan remove chrM
|
il y a 4 mois |
|
Thomas
|
5133ac3efd
liftover
|
il y a 5 mois |
|
Thomas
|
478f26daf0
improved BAM INS detection
|
il y a 6 mois |
|
Thomas
|
af50b44ea0
update VEP
|
il y a 6 mois |
|
Thomas
|
6f12252396
prom runs
|
il y a 7 mois |
|
Thomas
|
955bd9fc0e
scan
|
il y a 7 mois |
|
Thomas
|
9db8c5ef4b
all callers implemented for slurm. testing in progress
|
il y a 7 mois |
|
Thomas
|
b135d60d4e
callers
|
il y a 7 mois |
|
Thomas
|
901d8e4963
pipe metrics
|
il y a 7 mois |
|
Thomas
|
5e4e7c0275
run and run_many macro
|
il y a 7 mois |
|
Thomas
|
8b2c676daf
up
|
il y a 7 mois |
|
Thomas
|
78f31bc229
PromRun
|
il y a 7 mois |
|
Thomas
|
6c52a16a21
SamtoolsMergeMany, slurm_pipe/import upate
|
il y a 7 mois |
|
Thomas
|
4ac495035c
ClairS upate
|
il y a 7 mois |
|
Thomas
|
0d26c83b3e
BcfTools Slurm
|
il y a 8 mois |
|
Thomas
|
1f42f2b8ef
Pod5sFlowCell
|
il y a 8 mois |
|
Thomas
|
ba99b771cc
rm collections
|
il y a 8 mois |
|
Thomas
|
4de4f971fe
In the CLUSTER !!!
|
il y a 8 mois |
|
Thomas
|
93ee5d1c5e
up dorado
|
il y a 1 an |
|
Thomas
|
929c95c2d3
is file older now remove dir if so// DeepSomatic passed vcf path was wronggly pointing into DeepVariant mrd folder // nanomonsv is file older now check mrd and passed diag if older of respective bam
|
il y a 1 an |
|
Thomas
|
3604b225cf
BND to del
|
il y a 1 an |
|
Thomas
|
9157716ac1
find file
|
il y a 1 an |
|
Thomas
|
3c577c1023
Flowcells
|
il y a 1 an |
|
Thomas
|
23d0e0ea17
Trinucleotides and Early/Late annotations
|
il y a 1 an |
