 Thomas
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24d129c5a8
colorsdb update
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hai 1 mes |
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Thomas
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2a7460a44d
dbsnp parse even if no FREQ and echtvar use exec_jobs
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hai 1 mes |
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Thomas
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334057b7e1
merge
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hai 2 meses |
 STEIMLE Thomas
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1fcf1c5c22
Apply formatting cleanup
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hai 2 meses |
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Thomas
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4bbbc66981
Introducing new executor that takes a Vec<Vec<AnyJob>> and treat the inner vec as a sequence.jobs_seq![..] helps to define this sequence from any job that implement LocalRunner and SbatchRunner. ClairS implementation and new resume chunked (TODO: add clairs_allow_resume in config.
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hai 2 meses |
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Thomas
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e8875b045d
audit io helpers
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hai 2 meses |
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Thomas
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fe19eb6036
scan remove chrM
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hai 4 meses |
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Thomas
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5133ac3efd
liftover
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hai 5 meses |
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Thomas
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478f26daf0
improved BAM INS detection
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hai 6 meses |
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Thomas
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af50b44ea0
update VEP
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hai 6 meses |
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Thomas
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6f12252396
prom runs
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hai 7 meses |
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Thomas
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955bd9fc0e
scan
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hai 7 meses |
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Thomas
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9db8c5ef4b
all callers implemented for slurm. testing in progress
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hai 7 meses |
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Thomas
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b135d60d4e
callers
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hai 7 meses |
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Thomas
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901d8e4963
pipe metrics
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hai 7 meses |
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Thomas
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5e4e7c0275
run and run_many macro
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hai 7 meses |
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Thomas
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8b2c676daf
up
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hai 7 meses |
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Thomas
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78f31bc229
PromRun
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hai 7 meses |
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Thomas
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6c52a16a21
SamtoolsMergeMany, slurm_pipe/import upate
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hai 7 meses |
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Thomas
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4ac495035c
ClairS upate
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hai 7 meses |
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Thomas
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0d26c83b3e
BcfTools Slurm
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hai 8 meses |
|
Thomas
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1f42f2b8ef
Pod5sFlowCell
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hai 8 meses |
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Thomas
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ba99b771cc
rm collections
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hai 8 meses |
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Thomas
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4de4f971fe
In the CLUSTER !!!
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hai 8 meses |
|
Thomas
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93ee5d1c5e
up dorado
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hai 1 ano |
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Thomas
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929c95c2d3
is file older now remove dir if so// DeepSomatic passed vcf path was wronggly pointing into DeepVariant mrd folder // nanomonsv is file older now check mrd and passed diag if older of respective bam
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hai 1 ano |
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Thomas
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3604b225cf
BND to del
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hai 1 ano |
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Thomas
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9157716ac1
find file
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hai 1 ano |
|
Thomas
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3c577c1023
Flowcells
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hai 1 ano |
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Thomas
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23d0e0ea17
Trinucleotides and Early/Late annotations
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hai 1 ano |
