 Thomas
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4bbbc66981
Introducing new executor that takes a Vec<Vec<AnyJob>> and treat the inner vec as a sequence.jobs_seq![..] helps to define this sequence from any job that implement LocalRunner and SbatchRunner. ClairS implementation and new resume chunked (TODO: add clairs_allow_resume in config.
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1 kuukausi sitten |
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Thomas
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e8875b045d
audit io helpers
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1 kuukausi sitten |
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Thomas
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27489a85bc
config;panel_bam
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1 kuukausi sitten |
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Thomas
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5133ac3efd
liftover
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4 kuukautta sitten |
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Thomas
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66faf6060c
upgraded jobs names with part index
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4 kuukautta sitten |
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Thomas
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95062589e6
limit clairs mem
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4 kuukautta sitten |
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Thomas
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93f5594588
rm lock in chunked run fn
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4 kuukautta sitten |
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Thomas
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85fae9dc92
should_run befor lock
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4 kuukautta sitten |
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Thomas
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211191d148
doc update
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5 kuukautta sitten |
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Thomas
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30faf74aa1
nanomonsv MA
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5 kuukautta sitten |
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Thomas
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e516dd6b4d
nanomonsv tested
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5 kuukautta sitten |
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Thomas
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081a1b411b
straglr somatic change
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6 kuukautta sitten |
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Thomas
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116b2d7111
vcf_variants
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6 kuukautta sitten |
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Thomas
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a020475b87
fbinv
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6 kuukautta sitten |
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Thomas
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cab2f12c20
callers staglr
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6 kuukautta sitten |
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Thomas
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9db8c5ef4b
all callers implemented for slurm. testing in progress
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6 kuukautta sitten |
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Thomas
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c0060e3f5a
callers
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6 kuukautta sitten |
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Thomas
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b135d60d4e
callers
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6 kuukautta sitten |
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Thomas
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901d8e4963
pipe metrics
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6 kuukautta sitten |
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Thomas
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5e4e7c0275
run and run_many macro
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6 kuukautta sitten |
|
Thomas
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a7e83647b8
ClairS update
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6 kuukautta sitten |
|
Thomas
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6c52a16a21
SamtoolsMergeMany, slurm_pipe/import upate
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6 kuukautta sitten |
|
Thomas
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4ac495035c
ClairS upate
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6 kuukautta sitten |
|
Thomas
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8dd3c41065
DeepVariant upate
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6 kuukautta sitten |
|
Thomas
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0409a892e8
ClairS slurm
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6 kuukautta sitten |
|
Thomas
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1f42f2b8ef
Pod5sFlowCell
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6 kuukautta sitten |
|
Thomas
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37caffae61
upate version checker
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7 kuukautta sitten |
|
Thomas
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74c6f4da7b
bam alt/depth
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1 vuosi sitten |
|
Thomas
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23d0e0ea17
Trinucleotides and Early/Late annotations
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1 vuosi sitten |
|
Thomas
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a5880b4b84
caller bug // callers shoud run info // remove_dir_if_exists
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1 vuosi sitten |
