 Thomas
|
4bbbc66981
Introducing new executor that takes a Vec<Vec<AnyJob>> and treat the inner vec as a sequence.jobs_seq![..] helps to define this sequence from any job that implement LocalRunner and SbatchRunner. ClairS implementation and new resume chunked (TODO: add clairs_allow_resume in config.
|
hai 1 mes |
|
Thomas
|
e8875b045d
audit io helpers
|
hai 1 mes |
|
Thomas
|
27489a85bc
config;panel_bam
|
hai 1 mes |
|
Thomas
|
5133ac3efd
liftover
|
hai 4 meses |
|
Thomas
|
66faf6060c
upgraded jobs names with part index
|
hai 4 meses |
|
Thomas
|
95062589e6
limit clairs mem
|
hai 4 meses |
|
Thomas
|
93f5594588
rm lock in chunked run fn
|
hai 4 meses |
|
Thomas
|
85fae9dc92
should_run befor lock
|
hai 4 meses |
|
Thomas
|
211191d148
doc update
|
hai 5 meses |
|
Thomas
|
30faf74aa1
nanomonsv MA
|
hai 5 meses |
|
Thomas
|
e516dd6b4d
nanomonsv tested
|
hai 5 meses |
|
Thomas
|
081a1b411b
straglr somatic change
|
hai 6 meses |
|
Thomas
|
116b2d7111
vcf_variants
|
hai 6 meses |
|
Thomas
|
a020475b87
fbinv
|
hai 6 meses |
|
Thomas
|
cab2f12c20
callers staglr
|
hai 6 meses |
|
Thomas
|
9db8c5ef4b
all callers implemented for slurm. testing in progress
|
hai 6 meses |
|
Thomas
|
c0060e3f5a
callers
|
hai 6 meses |
|
Thomas
|
b135d60d4e
callers
|
hai 6 meses |
|
Thomas
|
901d8e4963
pipe metrics
|
hai 6 meses |
|
Thomas
|
5e4e7c0275
run and run_many macro
|
hai 6 meses |
|
Thomas
|
a7e83647b8
ClairS update
|
hai 6 meses |
|
Thomas
|
6c52a16a21
SamtoolsMergeMany, slurm_pipe/import upate
|
hai 6 meses |
|
Thomas
|
4ac495035c
ClairS upate
|
hai 6 meses |
|
Thomas
|
8dd3c41065
DeepVariant upate
|
hai 6 meses |
|
Thomas
|
0409a892e8
ClairS slurm
|
hai 6 meses |
|
Thomas
|
1f42f2b8ef
Pod5sFlowCell
|
hai 6 meses |
|
Thomas
|
37caffae61
upate version checker
|
hai 7 meses |
|
Thomas
|
74c6f4da7b
bam alt/depth
|
hai 1 ano |
|
Thomas
|
23d0e0ea17
Trinucleotides and Early/Late annotations
|
hai 1 ano |
|
Thomas
|
a5880b4b84
caller bug // callers shoud run info // remove_dir_if_exists
|
hai 1 ano |
