 Thomas
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7941d95fdc
depths
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il y a 3 semaines |
|
Thomas
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24d129c5a8
colorsdb update
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il y a 1 mois |
|
Thomas
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0aaeaf8ce8
colorsdb annotation
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il y a 1 mois |
|
Thomas
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3c15a2820a
bam annotation par
|
il y a 1 mois |
 STEIMLE Thomas
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1fcf1c5c22
Apply formatting cleanup
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il y a 2 mois |
|
Thomas
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4bbbc66981
Introducing new executor that takes a Vec<Vec<AnyJob>> and treat the inner vec as a sequence.jobs_seq![..] helps to define this sequence from any job that implement LocalRunner and SbatchRunner. ClairS implementation and new resume chunked (TODO: add clairs_allow_resume in config.
|
il y a 2 mois |
|
Thomas
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bf12d05d90
longcallD
|
il y a 2 mois |
|
Thomas
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3e63458572
merge
|
il y a 2 mois |
|
Thomas
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dcd1aa64f7
assembler pipe with recursion
|
il y a 2 mois |
|
Thomas
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44067c4310
assembler pipe
|
il y a 3 mois |
|
Thomas
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b85b028475
coral
|
il y a 3 mois |
|
Thomas
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d6250eeae7
coral
|
il y a 3 mois |
|
Thomas
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22d9b9f29d
savana_mem for slurm max mem
|
il y a 3 mois |
|
Thomas
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f216c34dce
reduced clairS threads; added slurm_max_par default: 10; use of run! and run_many! in bam import
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il y a 3 mois |
|
Thomas
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27489a85bc
config;panel_bam
|
il y a 3 mois |
|
Thomas
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069f6f8b38
Added GATK mutect2
|
il y a 5 mois |
|
Thomas
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035d9d3741
config: added IGV and viz required files
|
il y a 6 mois |
|
Thomas
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b2f8ba29dd
config: added db_snp
|
il y a 6 mois |
|
Thomas
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fbb733ef00
prom runs
|
il y a 7 mois |
|
Thomas
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c3b5e356bf
echtvar
|
il y a 7 mois |
|
Thomas
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f977672ffe
config from_path
|
il y a 7 mois |
|
Thomas
|
627c8ddef3
config from_path
|
il y a 7 mois |
|
Thomas
|
30faf74aa1
nanomonsv MA
|
il y a 7 mois |
|
Thomas
|
244ff9366f
nanomonsv MA
|
il y a 7 mois |
|
Thomas
|
081a1b411b
straglr somatic change
|
il y a 7 mois |
|
Thomas
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a020475b87
fbinv
|
il y a 7 mois |
|
Thomas
|
cab2f12c20
callers staglr
|
il y a 7 mois |
|
Thomas
|
b135d60d4e
callers
|
il y a 7 mois |
|
Thomas
|
848e7845ba
deep_somatic update
|
il y a 7 mois |
|
Thomas
|
5e4e7c0275
run and run_many macro
|
il y a 7 mois |
