 Thomas
|
b28a6f37b0
savana alt/depth from info, added n_alt_depth for info and above for vcf_variant
|
vor 7 Monaten |
|
Thomas
|
cc0ef4fcbe
Bug deletion desc when coming from BNDdesc
|
vor 7 Monaten |
|
Thomas
|
3604b225cf
BND to del
|
vor 7 Monaten |
|
Thomas
|
e8b86f0d83
annot repeatmasker
|
vor 7 Monaten |
|
Thomas
|
74c6f4da7b
bam alt/depth
|
vor 7 Monaten |
|
Thomas
|
a4df568492
bedrow overlaps par
|
vor 7 Monaten |
|
Thomas
|
17e88bd514
deletion desc n alt depth
|
vor 7 Monaten |
|
Thomas
|
5a323d50bc
clearer parse bnddesc
|
vor 7 Monaten |
|
Thomas
|
6054343630
group_variants_by_bnd_rc
|
vor 7 Monaten |
|
Thomas
|
3eeb7b514b
group_variants_by_bnd_desc
|
vor 7 Monaten |
|
Thomas
|
c69dcf818c
filter mapq
|
vor 8 Monaten |
|
Thomas
|
1a306f5e24
BNDdesc with BNDGraph // Scan verify if bam exists // depth at
|
vor 8 Monaten |
|
Thomas
|
ec89a0e159
Flowcells save gz
|
vor 8 Monaten |
|
Thomas
|
7911999078
Flowcells / MinKnow csv
|
vor 8 Monaten |
|
Thomas
|
cd352ede53
VCF write
|
vor 8 Monaten |
|
Thomas
|
8448c00e0d
deletions_len
|
vor 8 Monaten |
|
Thomas
|
fb515b9bd7
get_alteration_cats
|
vor 8 Monaten |
|
Thomas
|
4c5672cc47
stats + callers() + bed compare
|
vor 8 Monaten |
|
Thomas
|
23d0e0ea17
Trinucleotides and Early/Late annotations
|
vor 8 Monaten |
|
Thomas
|
a5880b4b84
caller bug // callers shoud run info // remove_dir_if_exists
|
vor 8 Monaten |
|
Thomas
|
0b6f1f3ffe
working scan no mem leaks because of pileup
|
vor 8 Monaten |
|
Thomas
|
980c173f72
variants rates + ncbi versions
|
vor 8 Monaten |
|
Thomas
|
9d84177b64
gz_writer + variants_stats + high depth ranges + BinCount depths + Bin depths
|
vor 8 Monaten |
|
Thomas
|
1cb6ad7442
gff + scan
|
vor 9 Monaten |
|
Thomas
|
23d4859f43
Savana CNSegment
|
vor 9 Monaten |
|
Thomas
|
ccb72720b4
Savana CNSegment
|
vor 9 Monaten |
|
Thomas
|
e09d58cbdb
variants final stats
|
vor 9 Monaten |
|
Thomas
|
6d1afb30dd
Variant n_alt_depth(&self) -> (f64, f64)
|
vor 9 Monaten |
|
Thomas
|
8ff2dc0b66
up alt cat
|
vor 9 Monaten |
|
Thomas
|
088093d58f
VariantsStats
|
vor 9 Monaten |
