 Thomas
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f83fe9a647
completing info and format
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10 months ago |
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Thomas
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ddc5410ec4
0 in vcf
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10 months ago |
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Thomas
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fc37d1bc9e
up
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10 months ago |
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Thomas
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b1c023fb7f
up
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10 months ago |
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Thomas
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def7533bef
up
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10 months ago |
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Thomas
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cd0c877566
jq format rule
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10 months ago |
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Thomas
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3b783dbb80
README.md for jq snippets // better nanomonsv parse and variants saving
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10 months ago |
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Thomas
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c95d7f33a0
variants merging and json save
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10 months ago |
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Thomas
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605ee768fb
json somatic stats
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10 months ago |
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Thomas
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7d4f9c06da
m
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11 months ago |
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Thomas
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a1b3c01b01
Integration to somatic pipe Severus Savana DeepSomatic / LongPhase up
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11 months ago |
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Thomas
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ecc6803c77
VEP Sv
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11 months ago |
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Thomas
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0c0c97d84b
blake3 hash128
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11 months ago |
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Thomas
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fe80f53381
ok
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11 months ago |
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Thomas
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19e0144f68
tidy
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11 months ago |
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Thomas
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62bb510dba
cleared syntax
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11 months ago |
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Thomas
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9008256d21
VEP
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11 months ago |
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Thomas
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add4a2ecc9
entropy filter // echtvar annotate
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11 months ago |
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Thomas
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45e1063e97
filters BAM finished (del pos + 1) // begin ExternalAnnotations
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11 months ago |
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Thomas
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4c2b6e5fa5
sankey charming
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11 months ago |
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Thomas
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80ba19f211
annotate_with_constit_bam (HighConstitAlt + LowConstitDepth) // counts_ins_at // alteration cat
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11 months ago |
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Thomas
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e01ab06376
somatic pipeline / blake3 128 for annotations hash / seq from fasta at position +/- len, entropy
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11 months ago |
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Thomas
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3085d82cfd
typst fmt
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11 months ago |
|
Thomas
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710bd6515c
annotations
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11 months ago |
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Thomas
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7e8f5a904b
up
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1 year ago |
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Thomas
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b5468f9176
dorado: added kit-name in basecaller and usage of kit-name from pod files instead of config
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1 year ago |
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Thomas
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14c829fadf
up dorado 0.9.0: added sequencing kit name for trim
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1 year ago |
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Thomas
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ba66e761f7
VCF loader, new and better struct Variant, deepvariant loader
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1 year ago |
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Thomas
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af8fd4c4d4
up
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1 year ago |
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Thomas
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12f24b0405
callers: savana, severus; traits: Run (stderr and stdout log and print), Initialize (global config), Version, HasOutput
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1 year ago |
