 Thomas
|
e8b86f0d83
annot repeatmasker
|
7 mesiacov pred |
|
Thomas
|
74c6f4da7b
bam alt/depth
|
7 mesiacov pred |
|
Thomas
|
49a95012cf
Annotation::VNTR
|
7 mesiacov pred |
|
Thomas
|
a4df568492
bedrow overlaps par
|
7 mesiacov pred |
|
Thomas
|
87a576356b
filter mapq
|
8 mesiacov pred |
|
Thomas
|
c69dcf818c
filter mapq
|
8 mesiacov pred |
|
Thomas
|
86513cba22
VCF write
|
8 mesiacov pred |
|
Thomas
|
4c5672cc47
stats + callers() + bed compare
|
8 mesiacov pred |
|
Thomas
|
23d0e0ea17
Trinucleotides and Early/Late annotations
|
8 mesiacov pred |
|
Thomas
|
a5880b4b84
caller bug // callers shoud run info // remove_dir_if_exists
|
8 mesiacov pred |
|
Thomas
|
03ec589273
macro and function for trait Should Run
|
8 mesiacov pred |
|
Thomas
|
0b6f1f3ffe
working scan no mem leaks because of pileup
|
8 mesiacov pred |
|
Thomas
|
980c173f72
variants rates + ncbi versions
|
8 mesiacov pred |
|
Thomas
|
9d84177b64
gz_writer + variants_stats + high depth ranges + BinCount depths + Bin depths
|
8 mesiacov pred |
|
Thomas
|
57321e6099
variant.n_cosmic()
|
9 mesiacov pred |
|
Thomas
|
e09d58cbdb
variants final stats
|
9 mesiacov pred |
|
Thomas
|
8ff2dc0b66
up alt cat
|
9 mesiacov pred |
|
Thomas
|
088093d58f
VariantsStats
|
9 mesiacov pred |
|
Thomas
|
2cd05492a7
m
|
9 mesiacov pred |
|
Thomas
|
ad0958ddb2
comments
|
9 mesiacov pred |
|
Thomas
|
fde4568495
vep stats
|
10 mesiacov pred |
|
Thomas
|
04ca65ee34
better err propagation; new jq consequence filter
|
10 mesiacov pred |
|
Thomas
|
c085500a20
error handling
|
10 mesiacov pred |
|
Thomas
|
6894b8a60f
err on json annot_init
|
10 mesiacov pred |
|
Thomas
|
3b783dbb80
README.md for jq snippets // better nanomonsv parse and variants saving
|
10 mesiacov pred |
|
Thomas
|
c95d7f33a0
variants merging and json save
|
10 mesiacov pred |
|
Thomas
|
605ee768fb
json somatic stats
|
10 mesiacov pred |
|
Thomas
|
7d4f9c06da
m
|
11 mesiacov pred |
|
Thomas
|
a1b3c01b01
Integration to somatic pipe Severus Savana DeepSomatic / LongPhase up
|
11 mesiacov pred |
|
Thomas
|
ecc6803c77
VEP Sv
|
11 mesiacov pred |
