 Thomas
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fde4568495
vep stats
|
il y a 10 mois |
|
Thomas
|
9e37c42646
opt build
|
il y a 10 mois |
|
Thomas
|
7387669238
ok
|
il y a 10 mois |
|
Thomas
|
b793b4a698
N50 and size for BAMStats
|
il y a 10 mois |
|
Thomas
|
04ca65ee34
better err propagation; new jq consequence filter
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il y a 10 mois |
|
Thomas
|
c085500a20
error handling
|
il y a 10 mois |
|
Thomas
|
6894b8a60f
err on json annot_init
|
il y a 10 mois |
|
Thomas
|
f83fe9a647
completing info and format
|
il y a 10 mois |
|
Thomas
|
ddc5410ec4
0 in vcf
|
il y a 10 mois |
|
Thomas
|
605ee768fb
json somatic stats
|
il y a 10 mois |
|
Thomas
|
fe80f53381
ok
|
il y a 11 mois |
|
Thomas
|
62bb510dba
cleared syntax
|
il y a 11 mois |
|
Thomas
|
45e1063e97
filters BAM finished (del pos + 1) // begin ExternalAnnotations
|
il y a 11 mois |
|
Thomas
|
4c2b6e5fa5
sankey charming
|
il y a 11 mois |
|
Thomas
|
80ba19f211
annotate_with_constit_bam (HighConstitAlt + LowConstitDepth) // counts_ins_at // alteration cat
|
il y a 11 mois |
|
Thomas
|
e01ab06376
somatic pipeline / blake3 128 for annotations hash / seq from fasta at position +/- len, entropy
|
il y a 11 mois |
|
Thomas
|
3085d82cfd
typst fmt
|
il y a 11 mois |
|
Thomas
|
710bd6515c
annotations
|
il y a 11 mois |
|
Thomas
|
14c829fadf
up dorado 0.9.0: added sequencing kit name for trim
|
il y a 1 an |
|
Thomas
|
ba66e761f7
VCF loader, new and better struct Variant, deepvariant loader
|
il y a 1 an |
|
Thomas
|
af8fd4c4d4
up
|
il y a 1 an |
|
Thomas
|
12f24b0405
callers: savana, severus; traits: Run (stderr and stdout log and print), Initialize (global config), Version, HasOutput
|
il y a 1 an |
|
Thomas
|
b692aefa9a
clairs phasing
|
il y a 1 an |
|
Thomas
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768f5e4c83
todo var
|
il y a 1 an |
|
Thomas
|
62265a008b
DMR
|
il y a 1 an |
|
Thomas
|
ae3d3c1ee9
modkit
|
il y a 1 an |
|
Thomas
|
e0894f5af7
bcftools keep only in a + modkit pileup
|
il y a 1 an |
|
Thomas
|
43eef222eb
error handling
|
il y a 1 an |
|
Thomas
|
6cb25899fa
dorado up to 0.8.1 changed demuxed names so new fn to find the bam file
|
il y a 1 an |
|
Thomas
|
63c5922d5d
todo_variants_agg tested
|
il y a 1 an |
