 Thomas
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fde4568495
vep stats
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hai 10 meses |
|
Thomas
|
9e37c42646
opt build
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hai 10 meses |
|
Thomas
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7387669238
ok
|
hai 10 meses |
|
Thomas
|
b793b4a698
N50 and size for BAMStats
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hai 10 meses |
|
Thomas
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04ca65ee34
better err propagation; new jq consequence filter
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hai 10 meses |
|
Thomas
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c085500a20
error handling
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hai 10 meses |
|
Thomas
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6894b8a60f
err on json annot_init
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hai 10 meses |
|
Thomas
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f83fe9a647
completing info and format
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hai 10 meses |
|
Thomas
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ddc5410ec4
0 in vcf
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hai 10 meses |
|
Thomas
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605ee768fb
json somatic stats
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hai 10 meses |
|
Thomas
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fe80f53381
ok
|
hai 11 meses |
|
Thomas
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62bb510dba
cleared syntax
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hai 11 meses |
|
Thomas
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45e1063e97
filters BAM finished (del pos + 1) // begin ExternalAnnotations
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hai 11 meses |
|
Thomas
|
4c2b6e5fa5
sankey charming
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hai 11 meses |
|
Thomas
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80ba19f211
annotate_with_constit_bam (HighConstitAlt + LowConstitDepth) // counts_ins_at // alteration cat
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hai 11 meses |
|
Thomas
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e01ab06376
somatic pipeline / blake3 128 for annotations hash / seq from fasta at position +/- len, entropy
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hai 11 meses |
|
Thomas
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3085d82cfd
typst fmt
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hai 11 meses |
|
Thomas
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710bd6515c
annotations
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hai 11 meses |
|
Thomas
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14c829fadf
up dorado 0.9.0: added sequencing kit name for trim
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hai 1 ano |
|
Thomas
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ba66e761f7
VCF loader, new and better struct Variant, deepvariant loader
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hai 1 ano |
|
Thomas
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af8fd4c4d4
up
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hai 1 ano |
|
Thomas
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12f24b0405
callers: savana, severus; traits: Run (stderr and stdout log and print), Initialize (global config), Version, HasOutput
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hai 1 ano |
|
Thomas
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b692aefa9a
clairs phasing
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hai 1 ano |
|
Thomas
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768f5e4c83
todo var
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hai 1 ano |
|
Thomas
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62265a008b
DMR
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hai 1 ano |
|
Thomas
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ae3d3c1ee9
modkit
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hai 1 ano |
|
Thomas
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e0894f5af7
bcftools keep only in a + modkit pileup
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hai 1 ano |
|
Thomas
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43eef222eb
error handling
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hai 1 ano |
|
Thomas
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6cb25899fa
dorado up to 0.8.1 changed demuxed names so new fn to find the bam file
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hai 1 ano |
|
Thomas
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63c5922d5d
todo_variants_agg tested
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hai 1 ano |
