 Thomas
|
2a7460a44d
dbsnp parse even if no FREQ and echtvar use exec_jobs
|
12 órája |
|
Thomas
|
65a90d09ee
dbsnp
|
13 órája |
|
Thomas
|
e454674804
todo: dbsnp doesnt report that
|
15 órája |
 STEIMLE Thomas
|
c3d27c4862
pandora file reader now accept any reader with Trait
|
20 órája |
|
Thomas
|
2372c77e2b
small modif
|
21 órája |
|
Thomas
|
3c15a2820a
bam annotation par
|
4 napja |
|
Thomas
|
f11370f0cf
gatk modif to use exec multiple jobs
|
1 hete |
|
STEIMLE Thomas
|
66b85fb388
Representation
|
2 hete |
|
STEIMLE Thomas
|
a607deb4ca
pandora container doc
|
2 hete |
|
STEIMLE Thomas
|
b28f23a056
refine somatic pandora output
|
2 hete |
|
STEIMLE Thomas
|
ff6cea3cb3
Use local Cargo config for Windows htslib patches
|
2 hete |
|
Thomas
|
334057b7e1
merge
|
2 hete |
|
STEIMLE Thomas
|
1fcf1c5c22
Apply formatting cleanup
|
2 hete |
|
STEIMLE Thomas
|
52d9e6486b
Add block-compressed Pandora variant index
|
2 hete |
|
STEIMLE Thomas
|
fdc969a486
Add Pandora reader and Windows curl patch
|
2 hete |
|
STEIMLE Thomas
|
87009c3474
Add Pandora SomaticPipe output container
|
2 hete |
|
Thomas
|
4bbbc66981
Introducing new executor that takes a Vec<Vec<AnyJob>> and treat the inner vec as a sequence.jobs_seq![..] helps to define this sequence from any job that implement LocalRunner and SbatchRunner. ClairS implementation and new resume chunked (TODO: add clairs_allow_resume in config.
|
1 hónapja |
|
Thomas
|
1c81c5bf58
update longcallD merge BAM
|
1 hónapja |
|
Thomas
|
bf12d05d90
longcallD
|
1 hónapja |
|
Thomas
|
3ea0a26d87
multiallelic normalization (just for INFO FREQ of dbsnp) for fetch_vcf, prefer normalized vcf...
|
1 hónapja |
|
Thomas
|
a0f6db44b0
multiallelic normalization (just for INFO FREQ of dbsnp) for fetch_vcf, prefer normalized vcf...
|
1 hónapja |
|
Thomas
|
a1ab3e9dc6
dbg
|
1 hónapja |
|
Thomas
|
f685632548
dbg
|
1 hónapja |
|
Thomas
|
3e63458572
merge
|
1 hónapja |
|
Thomas
|
7abe30225b
ok
|
1 hónapja |
|
Thomas
|
e8875b045d
audit io helpers
|
1 hónapja |
|
Thomas
|
bd5f0f912a
fix vcf_variant.rs: liftover position overflow and redundant allocation
|
1 hónapja |
|
Thomas
|
80432a5436
fix three bugs in variant module
|
1 hónapja |
|
Thomas
|
9fe2d09789
fix variant duplication bug in Variants::merge
|
1 hónapja |
|
Thomas
|
e4ef7537d2
add //! module header to io/mod.rs; fix fastq.rs buffering
|
1 hónapja |
