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pandora_lib_promethion
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pandora_lib_pro...
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Thomas
12f24b0405
callers: savana, severus; traits: Run (stderr and stdout log and print), Initialize (global config), Version, HasOutput
il y a 1 an
src
12f24b0405
callers: savana, severus; traits: Run (stderr and stdout log and print), Initialize (global config), Version, HasOutput
il y a 1 an
.gitignore
494efb6235
run
il y a 1 an
Cargo.lock
b692aefa9a
clairs phasing
il y a 1 an
Cargo.toml
b692aefa9a
clairs phasing
il y a 1 an
README.md
e0894f5af7
bcftools keep only in a + modkit pileup
il y a 1 an
README.md
Install
Dependencies
For building required HTSlib:
sudo apt install cmake libclang-dev
minimap2
(samtools)[
https://www.htslib.org/download/
]
(dorado)[
https://github.com/nanoporetech/dorado
]
(bcftools)[
https://www.htslib.org/download/
]
(modkit)[
https://github.com/nanoporetech/modkit
]
VEP: cf pandora_lib_variants for VEP install
nanomonsv (cf dependencies at github, TODO: use racon) ###