| 123456789101112 |
- flowchart TD
- Z["Variants from VCFs constit: 3,504,804"]--> ZZ["Into constit registry"] --> B
- A["Variants from VCFs bulk: 4,458,549"] -->|First pass| B{Variant is in
- constit registry ?}
- B --> |yes| C{Constit depth < 6}
- B --> |no| I["Variants for second pass 1,055,434 (24%)"]
- C --> |yes| D["Low constit depth: 1,070,325 (24%)"]
- C --> |no| E{VAF}
- E --> |100%| F["Constit 2,329,315 (52%)"]
- E --> G{Chi2 AF pval}
- G --> |< 0.01| H["LOH 3,474 (0,1%)"]
- G --> F
|
