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- flowchart TD
- A["Variants from first pass 1,055,434"] --> B{Constit BAM pileup
- depth at the variant
- position}
- B --> | < 6| C["Low Constit depth 718,656 (68%)"]
- B --> D{Variant seen
- at least one time
- in the pileup}
- D --> |yes| E["Constit 128,065 (12%)"]
- D --> |no| F{Take -20 +20
- reference sequence
- check diversity }
- F --> |low entropy < 1.8| H["Low diversity 183,528 (17%)"]
- F --> I["Somatic 24,331 (2,3% 0,55%)"]
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