 Thomas
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4bbbc66981
Introducing new executor that takes a Vec<Vec<AnyJob>> and treat the inner vec as a sequence.jobs_seq![..] helps to define this sequence from any job that implement LocalRunner and SbatchRunner. ClairS implementation and new resume chunked (TODO: add clairs_allow_resume in config.
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hai 1 mes |
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Thomas
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e8875b045d
audit io helpers
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hai 1 mes |
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Thomas
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d6250eeae7
coral
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hai 1 mes |
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Thomas
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66faf6060c
upgraded jobs names with part index
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hai 4 meses |
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Thomas
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93f5594588
rm lock in chunked run fn
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hai 4 meses |
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Thomas
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211191d148
doc update
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hai 5 meses |
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Thomas
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30faf74aa1
nanomonsv MA
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hai 5 meses |
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Thomas
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e516dd6b4d
nanomonsv tested
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hai 6 meses |
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Thomas
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8e7e1df6bc
Update callers and config
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hai 6 meses |
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Thomas
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116b2d7111
vcf_variants
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hai 6 meses |
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Thomas
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cab2f12c20
callers staglr
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hai 6 meses |
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Thomas
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9db8c5ef4b
all callers implemented for slurm. testing in progress
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hai 6 meses |
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Thomas
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c0060e3f5a
callers
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hai 6 meses |
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Thomas
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b135d60d4e
callers
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hai 6 meses |
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Thomas
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848e7845ba
deep_somatic update
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hai 6 meses |
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Thomas
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1f42f2b8ef
Pod5sFlowCell
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hai 6 meses |
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Thomas
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37caffae61
upate version checker
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hai 7 meses |
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Thomas
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cf7c41a98c
dorardo up and emit-moves
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hai 1 ano |
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Thomas
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6e963786e3
no gvcf for deep callers
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hai 1 ano |
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Thomas
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3604b225cf
BND to del
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hai 1 ano |
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Thomas
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74c6f4da7b
bam alt/depth
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hai 1 ano |
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Thomas
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23d0e0ea17
Trinucleotides and Early/Late annotations
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hai 1 ano |
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Thomas
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a5880b4b84
caller bug // callers shoud run info // remove_dir_if_exists
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hai 1 ano |
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Thomas
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3700d19af7
Label Trait and impl
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hai 1 ano |
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Thomas
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03ec589273
macro and function for trait Should Run
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hai 1 ano |
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Thomas
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91cde944f4
rationalization adn documentation of callers functions
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hai 1 ano |
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Thomas
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8ff2dc0b66
up alt cat
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hai 1 ano |
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Thomas
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04ca65ee34
better err propagation; new jq consequence filter
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hai 1 ano |
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Thomas
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605ee768fb
json somatic stats
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hai 1 ano |
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Thomas
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a1b3c01b01
Integration to somatic pipe Severus Savana DeepSomatic / LongPhase up
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hai 1 ano |
