 Thomas
|
a1b3c01b01
Integration to somatic pipe Severus Savana DeepSomatic / LongPhase up
|
11 mesiacov pred |
|
Thomas
|
ecc6803c77
VEP Sv
|
11 mesiacov pred |
|
Thomas
|
0c0c97d84b
blake3 hash128
|
11 mesiacov pred |
|
Thomas
|
fe80f53381
ok
|
11 mesiacov pred |
|
Thomas
|
19e0144f68
tidy
|
11 mesiacov pred |
|
Thomas
|
62bb510dba
cleared syntax
|
11 mesiacov pred |
|
Thomas
|
9008256d21
VEP
|
11 mesiacov pred |
|
Thomas
|
add4a2ecc9
entropy filter // echtvar annotate
|
11 mesiacov pred |
|
Thomas
|
45e1063e97
filters BAM finished (del pos + 1) // begin ExternalAnnotations
|
11 mesiacov pred |
|
Thomas
|
4c2b6e5fa5
sankey charming
|
11 mesiacov pred |
|
Thomas
|
80ba19f211
annotate_with_constit_bam (HighConstitAlt + LowConstitDepth) // counts_ins_at // alteration cat
|
11 mesiacov pred |
|
Thomas
|
e01ab06376
somatic pipeline / blake3 128 for annotations hash / seq from fasta at position +/- len, entropy
|
11 mesiacov pred |
|
Thomas
|
3085d82cfd
typst fmt
|
11 mesiacov pred |
|
Thomas
|
710bd6515c
annotations
|
11 mesiacov pred |
|
Thomas
|
7e8f5a904b
up
|
1 rok pred |
|
Thomas
|
b5468f9176
dorado: added kit-name in basecaller and usage of kit-name from pod files instead of config
|
1 rok pred |
|
Thomas
|
14c829fadf
up dorado 0.9.0: added sequencing kit name for trim
|
1 rok pred |
|
Thomas
|
ba66e761f7
VCF loader, new and better struct Variant, deepvariant loader
|
1 rok pred |
|
Thomas
|
af8fd4c4d4
up
|
1 rok pred |
|
Thomas
|
12f24b0405
callers: savana, severus; traits: Run (stderr and stdout log and print), Initialize (global config), Version, HasOutput
|
1 rok pred |
|
Thomas
|
b692aefa9a
clairs phasing
|
1 rok pred |
|
Thomas
|
768f5e4c83
todo var
|
1 rok pred |
|
Thomas
|
62265a008b
DMR
|
1 rok pred |
|
Thomas
|
ae3d3c1ee9
modkit
|
1 rok pred |
|
Thomas
|
e0894f5af7
bcftools keep only in a + modkit pileup
|
1 rok pred |
|
Thomas
|
43eef222eb
error handling
|
1 rok pred |
|
Thomas
|
bf79d554e2
up bcftools
|
1 rok pred |
|
Thomas
|
b06901c8a1
better tasks runner
|
1 rok pred |
|
Thomas
|
948ba7454f
info
|
1 rok pred |
|
Thomas
|
6cb25899fa
dorado up to 0.8.1 changed demuxed names so new fn to find the bam file
|
1 rok pred |
