 Thomas
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a1b3c01b01
Integration to somatic pipe Severus Savana DeepSomatic / LongPhase up
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hai 11 meses |
|
Thomas
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ecc6803c77
VEP Sv
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hai 11 meses |
|
Thomas
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0c0c97d84b
blake3 hash128
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hai 11 meses |
|
Thomas
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fe80f53381
ok
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hai 11 meses |
|
Thomas
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19e0144f68
tidy
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hai 11 meses |
|
Thomas
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62bb510dba
cleared syntax
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hai 11 meses |
|
Thomas
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9008256d21
VEP
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hai 11 meses |
|
Thomas
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add4a2ecc9
entropy filter // echtvar annotate
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hai 11 meses |
|
Thomas
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45e1063e97
filters BAM finished (del pos + 1) // begin ExternalAnnotations
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hai 11 meses |
|
Thomas
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4c2b6e5fa5
sankey charming
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hai 11 meses |
|
Thomas
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80ba19f211
annotate_with_constit_bam (HighConstitAlt + LowConstitDepth) // counts_ins_at // alteration cat
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hai 11 meses |
|
Thomas
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e01ab06376
somatic pipeline / blake3 128 for annotations hash / seq from fasta at position +/- len, entropy
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hai 11 meses |
|
Thomas
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3085d82cfd
typst fmt
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hai 11 meses |
|
Thomas
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710bd6515c
annotations
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hai 11 meses |
|
Thomas
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7e8f5a904b
up
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hai 1 ano |
|
Thomas
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b5468f9176
dorado: added kit-name in basecaller and usage of kit-name from pod files instead of config
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hai 1 ano |
|
Thomas
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14c829fadf
up dorado 0.9.0: added sequencing kit name for trim
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hai 1 ano |
|
Thomas
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ba66e761f7
VCF loader, new and better struct Variant, deepvariant loader
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hai 1 ano |
|
Thomas
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af8fd4c4d4
up
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hai 1 ano |
|
Thomas
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12f24b0405
callers: savana, severus; traits: Run (stderr and stdout log and print), Initialize (global config), Version, HasOutput
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hai 1 ano |
|
Thomas
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b692aefa9a
clairs phasing
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hai 1 ano |
|
Thomas
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768f5e4c83
todo var
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hai 1 ano |
|
Thomas
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62265a008b
DMR
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hai 1 ano |
|
Thomas
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ae3d3c1ee9
modkit
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hai 1 ano |
|
Thomas
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e0894f5af7
bcftools keep only in a + modkit pileup
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hai 1 ano |
|
Thomas
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43eef222eb
error handling
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hai 1 ano |
|
Thomas
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bf79d554e2
up bcftools
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hai 1 ano |
|
Thomas
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b06901c8a1
better tasks runner
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hai 1 ano |
|
Thomas
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948ba7454f
info
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hai 1 ano |
|
Thomas
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6cb25899fa
dorado up to 0.8.1 changed demuxed names so new fn to find the bam file
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hai 1 ano |
