 Thomas
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cf7c41a98c
dorardo up and emit-moves
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il y a 7 mois |
|
Thomas
|
db1f7422c6
no gvcf for deep callers
|
il y a 7 mois |
|
Thomas
|
258e2a5172
up deepvariant deepsomatic
|
il y a 7 mois |
|
Thomas
|
043ce2f1d4
up deepvariant deepsomatic
|
il y a 7 mois |
|
Thomas
|
c69dcf818c
filter mapq
|
il y a 8 mois |
|
Thomas
|
4c5672cc47
stats + callers() + bed compare
|
il y a 8 mois |
|
Thomas
|
23d0e0ea17
Trinucleotides and Early/Late annotations
|
il y a 8 mois |
|
Thomas
|
a5880b4b84
caller bug // callers shoud run info // remove_dir_if_exists
|
il y a 8 mois |
|
Thomas
|
03ec589273
macro and function for trait Should Run
|
il y a 8 mois |
|
Thomas
|
91cde944f4
rationalization adn documentation of callers functions
|
il y a 8 mois |
|
Thomas
|
0b6f1f3ffe
working scan no mem leaks because of pileup
|
il y a 8 mois |
|
Thomas
|
9d84177b64
gz_writer + variants_stats + high depth ranges + BinCount depths + Bin depths
|
il y a 8 mois |
|
Thomas
|
1cb6ad7442
gff + scan
|
il y a 9 mois |
|
Thomas
|
e09d58cbdb
variants final stats
|
il y a 9 mois |
|
Thomas
|
8ff2dc0b66
up alt cat
|
il y a 9 mois |
|
Thomas
|
c085500a20
error handling
|
il y a 10 mois |
|
Thomas
|
f83fe9a647
completing info and format
|
il y a 10 mois |
|
Thomas
|
ddc5410ec4
0 in vcf
|
il y a 10 mois |
|
Thomas
|
605ee768fb
json somatic stats
|
il y a 10 mois |
|
Thomas
|
7d4f9c06da
m
|
il y a 11 mois |
|
Thomas
|
a1b3c01b01
Integration to somatic pipe Severus Savana DeepSomatic / LongPhase up
|
il y a 11 mois |
|
Thomas
|
62bb510dba
cleared syntax
|
il y a 11 mois |
|
Thomas
|
add4a2ecc9
entropy filter // echtvar annotate
|
il y a 11 mois |
|
Thomas
|
80ba19f211
annotate_with_constit_bam (HighConstitAlt + LowConstitDepth) // counts_ins_at // alteration cat
|
il y a 11 mois |
|
Thomas
|
7e8f5a904b
up
|
il y a 1 an |
|
Thomas
|
b5468f9176
dorado: added kit-name in basecaller and usage of kit-name from pod files instead of config
|
il y a 1 an |
|
Thomas
|
14c829fadf
up dorado 0.9.0: added sequencing kit name for trim
|
il y a 1 an |
|
Thomas
|
ba66e761f7
VCF loader, new and better struct Variant, deepvariant loader
|
il y a 1 an |
|
Thomas
|
af8fd4c4d4
up
|
il y a 1 an |
|
Thomas
|
12f24b0405
callers: savana, severus; traits: Run (stderr and stdout log and print), Initialize (global config), Version, HasOutput
|
il y a 1 an |
