Thomas
6cb25899fa
dorado up to 0.8.1 changed demuxed names so new fn to find the bam file
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1 gadu atpakaļ | |
|---|---|---|
| src | 1 gadu atpakaļ | |
| .gitignore | 1 gadu atpakaļ | |
| Cargo.lock | 1 gadu atpakaļ | |
| Cargo.toml | 1 gadu atpakaļ | |
| README.md | 1 gadu atpakaļ | |
| ok_cases.tsv | 1 gadu atpakaļ |
README.md
For building required HTSlib:
sudo apt install cmake libclang-dev
- minimap2
- samtools
- dorado
modkit
cargo install --git https://github.com/nanoporetech/modkit.git
for variants:
- VEP: cf pandora_lib_variants for VEP install